RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SRGAP3O43295 1099 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 RC3H1Q5TC82 1133 aaKnown RBP15.38■□□□□ 0.05
CIITA-202ENST00000381835 ANKRD45Q5TZF3 282 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 KAZALD1Q96I82 304 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 BICC1Q9H694 974 aaKnown RBP15.38■□□□□ 0.05
CIITA-202ENST00000381835 IBTKQ9P2D0 1353 aaPredicted RBP15.38■□□□□ 0.05
CIITA-202ENST00000381835 APBB1O00213 710 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 APBA3O96018 575 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 HSP90AB3PQ58FF7 597 aa15.38■□□□□ 0.05
CIITA-202ENST00000381835 ANKRD36CQ5JPF3 1778 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 RPS6KA4O75676 772 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 C4BP0C0L5 1744 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 CAMTA2O94983 1202 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 NUCB1Q02818 461 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 TRIM28Q13263 835 aaKnown RBP15.37■□□□□ 0.05
CIITA-202ENST00000381835 LNPKQ9C0E8 428 aa15.37■□□□□ 0.05
CIITA-202ENST00000381835 RTCBQ9Y3I0 505 aaKnown RBP15.37■□□□□ 0.05
CIITA-202ENST00000381835 H7C1W4 665 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 EPHA10Q5JZY3 1008 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 SLC27A3Q5K4L6 730 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 SSH3Q8TE77 659 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 AK7Q96M32 723 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 EXOC6BQ9Y2D4 811 aa15.36■□□□□ 0.05
CIITA-202ENST00000381835 CASP7P55210 303 aa15.35■□□□□ 0.05
CIITA-202ENST00000381835 TXNRD1Q16881 649 aa15.35■□□□□ 0.05
CIITA-202ENST00000381835 NLRP10Q86W26 655 aa15.35■□□□□ 0.05
CIITA-202ENST00000381835 CHD1LQ86WJ1 897 aa15.35■□□□□ 0.05
CIITA-202ENST00000381835 ILDR1Q86SU0 546 aaPredicted RBP15.35■□□□□ 0.05
CIITA-202ENST00000381835 AMIGO3Q86WK7 504 aa15.35■□□□□ 0.05
CIITA-202ENST00000381835 PHF14O94880 888 aa15.34■□□□□ 0.05
CIITA-202ENST00000381835 MTX1Q13505 466 aa15.34■□□□□ 0.05
CIITA-202ENST00000381835 POLA2Q14181 598 aa15.34■□□□□ 0.05
CIITA-202ENST00000381835 PROM2Q8N271 834 aa15.34■□□□□ 0.05
CIITA-202ENST00000381835 FAM89AQ96GI7 184 aa15.34■□□□□ 0.05
CIITA-202ENST00000381835 UBN2Q6ZU65 1347 aa15.33■□□□□ 0.05
CIITA-202ENST00000381835 PLSCR1O15162 318 aa15.33■□□□□ 0.05
CIITA-202ENST00000381835 ZNF34Q8IZ26 560 aa15.33■□□□□ 0.05
CIITA-202ENST00000381835 ZNF652Q9Y2D9 606 aa15.33■□□□□ 0.05
CIITA-202ENST00000381835 BCORQ6W2J9 1755 aa15.33■□□□□ 0.04
CIITA-202ENST00000381835 FAM177BA6PVY3 158 aa15.33■□□□□ 0.04
CIITA-202ENST00000381835 EIF5BO60841 1220 aaKnown RBP15.33■□□□□ 0.04
CIITA-202ENST00000381835 SURF6O75683 361 aaKnown RBP15.33■□□□□ 0.04
CIITA-202ENST00000381835 SEC24BO95487 1268 aa15.33■□□□□ 0.04
CIITA-202ENST00000381835 BECN1Q14457 450 aa15.33■□□□□ 0.04
CIITA-202ENST00000381835 TRMT112Q9UI30 125 aaKnown RBP15.33■□□□□ 0.04
CIITA-202ENST00000381835 SMARCA5O60264 1052 aaPredicted RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 PCCAP05165 728 aaPredicted RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 SYNE4Q8N205 404 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 ZBTB38Q8NAP3 1195 aaPredicted RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 ARHGEF1Q92888 912 aaKnown RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 NIP7Q9Y221 180 aaKnown RBP eCLIP15.32■□□□□ 0.04
CIITA-202ENST00000381835 TNS1Q9HBL0 1735 aaKnown RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 ZPR1O75312 459 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 TRAPPC3LQ5T215 181 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 USPL1Q5W0Q7 1092 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 NARFQ9UHQ1 456 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 PA2G4Q9UQ80 394 aaKnown RBP15.32■□□□□ 0.04
CIITA-202ENST00000381835 CHMP3Q9Y3E7 222 aa15.32■□□□□ 0.04
CIITA-202ENST00000381835 LMBR1LQ6UX01 489 aa15.31■□□□□ 0.04
CIITA-202ENST00000381835 RFC4P35249 363 aa15.31■□□□□ 0.04
CIITA-202ENST00000381835 FOXO4P98177 505 aa15.31■□□□□ 0.04
CIITA-202ENST00000381835 RABL6Q3YEC7 729 aaPredicted RBP15.31■□□□□ 0.04
CIITA-202ENST00000381835 CLEC4GQ6UXB4 293 aa15.31■□□□□ 0.04
CIITA-202ENST00000381835 UBR3Q6ZT12 1888 aa15.3■□□□□ 0.04
CIITA-202ENST00000381835 SUSD4Q5VX71 490 aa15.3■□□□□ 0.04
CIITA-202ENST00000381835 BICDL1Q6ZP65 573 aa15.3■□□□□ 0.04
CIITA-202ENST00000381835 KLHDC4Q8TBB5 520 aa15.3■□□□□ 0.04
CIITA-202ENST00000381835 C4AP0C0L4 1744 aa15.3■□□□□ 0.04
CIITA-202ENST00000381835 SCN7AQ01118 1682 aa15.29■□□□□ 0.04
CIITA-202ENST00000381835 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.29■□□□□ 0.04
CIITA-202ENST00000381835 OS9Q13438 667 aaPredicted RBP15.29■□□□□ 0.04
CIITA-202ENST00000381835 LRRCC1Q9C099 1032 aa15.29■□□□□ 0.04
CIITA-202ENST00000381835 BCL2L12Q9HB09 334 aa15.29■□□□□ 0.04
CIITA-202ENST00000381835 PARP10Q53GL7 1025 aa15.29■□□□□ 0.04
CIITA-202ENST00000381835 C16orf71Q8IYS4 520 aaPredicted RBP15.28■□□□□ 0.04
CIITA-202ENST00000381835 UTP14AQ9BVJ6 771 aaKnown RBP15.28■□□□□ 0.04
CIITA-202ENST00000381835 SIL1Q9H173 461 aa15.28■□□□□ 0.04
CIITA-202ENST00000381835 UPF2Q9HAU5 1272 aaKnown RBP15.28■□□□□ 0.04
CIITA-202ENST00000381835 IRS4O14654 1257 aaPredicted RBP15.28■□□□□ 0.04
CIITA-202ENST00000381835 TBC1D9BQ66K14 1250 aa15.28■□□□□ 0.04
CIITA-202ENST00000381835 CCDC85AQ96PX6 553 aaPredicted RBP15.28■□□□□ 0.04
CIITA-202ENST00000381835 CDHR2Q9BYE9 1310 aa15.28■□□□□ 0.04
CIITA-202ENST00000381835 MYH3P11055 1940 aa15.27■□□□□ 0.04
CIITA-202ENST00000381835 HSP90AB4PQ58FF6 505 aa15.27■□□□□ 0.04
CIITA-202ENST00000381835 IL1RAPL2Q9NP60 686 aa15.27■□□□□ 0.04
CIITA-202ENST00000381835 USP42Q9H9J4 1324 aaKnown RBP15.27■□□□□ 0.04
CIITA-202ENST00000381835 RAB11FIP3O75154 756 aa15.27■□□□□ 0.03
CIITA-202ENST00000381835 ADRA2BP18089 450 aa15.27■□□□□ 0.03
CIITA-202ENST00000381835 HMGB2P26583 209 aaKnown RBP15.27■□□□□ 0.03
CIITA-202ENST00000381835 SLKQ9H2G2 1235 aaPredicted RBP15.27■□□□□ 0.03
CIITA-202ENST00000381835 SH3TC1Q8TE82 1336 aa15.27■□□□□ 0.03
CIITA-202ENST00000381835 EN1Q05925 392 aaPredicted RBP15.26■□□□□ 0.03
CIITA-202ENST00000381835 G3BP1Q13283 466 aaKnown RBP eCLIP15.26■□□□□ 0.03
CIITA-202ENST00000381835 NUTM1Q86Y26 1132 aa15.26■□□□□ 0.03
CIITA-202ENST00000381835 RHPN1Q8TCX5 695 aa15.26■□□□□ 0.03
CIITA-202ENST00000381835 OTUD7AQ8TE49 926 aaPredicted RBP15.26■□□□□ 0.03
CIITA-202ENST00000381835 PLA2G12BQ9BX93 195 aa15.26■□□□□ 0.03
CIITA-202ENST00000381835 TFCP2L1Q9NZI6 479 aa15.26■□□□□ 0.03
CIITA-202ENST00000381835 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms