RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CABP4P57796 275 aa16.19■□□□□ 0.18
CCDC3-202ENST00000378839 G3BP1Q13283 466 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC3-202ENST00000378839 RPAP1Q9BWH6 1393 aaPredicted RBP16.19■□□□□ 0.18
CCDC3-202ENST00000378839 CASP7P55210 303 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 FMNL2Q96PY5 1086 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 BOLA2Q9H3K6 86 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 TAF6LQ9Y6J9 622 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 ARFGEF2Q9Y6D5 1785 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 ZSCAN23Q3MJ62 389 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 TTC5Q8N0Z6 440 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 DIAPH3Q9NSV4 1193 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 PTPN12Q05209 780 aaKnown RBP16.18■□□□□ 0.18
CCDC3-202ENST00000378839 NMIQ13287 307 aaPredicted RBP16.18■□□□□ 0.18
CCDC3-202ENST00000378839 NDUFB9Q9Y6M9 179 aa16.18■□□□□ 0.18
CCDC3-202ENST00000378839 NCLP19338 710 aaKnown RBP16.17■□□□□ 0.18
CCDC3-202ENST00000378839 PRPF40BQ6NWY9 871 aaKnown RBP16.17■□□□□ 0.18
CCDC3-202ENST00000378839 UBE3BQ7Z3V4 1068 aa16.17■□□□□ 0.18
CCDC3-202ENST00000378839 EVI5LQ96CN4 794 aa16.17■□□□□ 0.18
CCDC3-202ENST00000378839 A0A0D9SFI3 127 aa16.17■□□□□ 0.18
CCDC3-202ENST00000378839 NEXNQ0ZGT2 675 aa16.17■□□□□ 0.18
CCDC3-202ENST00000378839 FOXD4L6Q3SYB3 417 aaPredicted RBP16.17■□□□□ 0.18
CCDC3-202ENST00000378839 FOXD4L3Q6VB84 417 aaPredicted RBP16.17■□□□□ 0.18
CCDC3-202ENST00000378839 NECTIN1Q15223 517 aa16.16■□□□□ 0.18
CCDC3-202ENST00000378839 KCNB2Q92953 911 aa16.16■□□□□ 0.18
CCDC3-202ENST00000378839 NAP1L5Q96NT1 182 aaPredicted RBP16.16■□□□□ 0.18
CCDC3-202ENST00000378839 TMEM63CQ9P1W3 806 aa16.16■□□□□ 0.18
CCDC3-202ENST00000378839 AFDNP55196 1824 aaKnown RBP16.16■□□□□ 0.18
CCDC3-202ENST00000378839 ST3GAL1Q11201 340 aa16.16■□□□□ 0.18
CCDC3-202ENST00000378839 ISY1Q9ULR0 285 aaKnown RBP16.16■□□□□ 0.18
CCDC3-202ENST00000378839 CASTP20810 708 aaKnown RBP16.16■□□□□ 0.18
CCDC3-202ENST00000378839 TTLL7Q6ZT98 887 aa16.16■□□□□ 0.18
CCDC3-202ENST00000378839 TFCP2Q12800 502 aa16.15■□□□□ 0.18
CCDC3-202ENST00000378839 DBNLQ9UJU6 430 aaKnown RBP16.15■□□□□ 0.18
CCDC3-202ENST00000378839 ZNF445P59923 1031 aa16.15■□□□□ 0.18
CCDC3-202ENST00000378839 RABL6Q3YEC7 729 aaPredicted RBP16.15■□□□□ 0.18
CCDC3-202ENST00000378839 KIAA1211Q6ZU35 1233 aa16.15■□□□□ 0.18
CCDC3-202ENST00000378839 GDPD2Q9HCC8 539 aa16.15■□□□□ 0.18
CCDC3-202ENST00000378839 COL15A1P39059 1388 aa16.15■□□□□ 0.18
CCDC3-202ENST00000378839 ERBB4Q15303 1308 aa16.14■□□□□ 0.18
CCDC3-202ENST00000378839 WDR17Q8IZU2 1322 aa16.14■□□□□ 0.18
CCDC3-202ENST00000378839 PARP4Q9UKK3 1724 aaKnown RBP16.14■□□□□ 0.17
CCDC3-202ENST00000378839 COPRSQ9NQ92 184 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 CCDC171Q6TFL3 1326 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 ZNF335Q9H4Z2 1342 aaPredicted RBP16.14■□□□□ 0.17
CCDC3-202ENST00000378839 A1BGP04217 495 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 ZNF589Q86UQ0 364 aaPredicted RBP16.14■□□□□ 0.17
CCDC3-202ENST00000378839 HDAC5Q9UQL6 1122 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 COL5A2P05997 1499 aaPredicted RBP16.14■□□□□ 0.17
CCDC3-202ENST00000378839 KCPQ6ZWJ8 1503 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 A0A087WZG4 1122 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 GPATCH3Q96I76 525 aa16.14■□□□□ 0.17
CCDC3-202ENST00000378839 TOM1L2Q6ZVM7 507 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 JAKMIP1Q96N16 626 aaKnown RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 PRDM11Q9NQV5 511 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 SNRKQ9NRH2 765 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 RBM8AQ9Y5S9 174 aaKnown RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 LAMB4A4D0S4 1761 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 SHANK3Q9BYB0 1731 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 GADD45BO75293 160 aaPredicted RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 PRIM1P49642 420 aaKnown RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 FOXO4P98177 505 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 ZCRB1Q8TBF4 217 aaKnown RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 MAP4K1Q92918 833 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 RBSNQ9H1K0 784 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 ZSWIM6Q9HCJ5 1215 aa16.13■□□□□ 0.17
CCDC3-202ENST00000378839 SOS2Q07890 1332 aaPredicted RBP16.13■□□□□ 0.17
CCDC3-202ENST00000378839 PLBD2Q8NHP8 589 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 TNNI3KQ59H18 835 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 CREB3L3Q68CJ9 461 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 LIMCH1Q9UPQ0 1083 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 FPGT-TNNI3KV9GXZ4 949 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 UBR2Q8IWV8 1755 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 PLEKHG2Q9H7P9 1386 aa16.12■□□□□ 0.17
CCDC3-202ENST00000378839 RUFY2Q8WXA3 655 aa16.11■□□□□ 0.17
CCDC3-202ENST00000378839 MED23Q9ULK4 1368 aa16.11■□□□□ 0.17
CCDC3-202ENST00000378839 SLAIN2Q9P270 581 aa16.11■□□□□ 0.17
CCDC3-202ENST00000378839 SLC27A2O14975 620 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 LMBR1LQ6UX01 489 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 DBNDD2Q9BQY9 259 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 FSD1Q9BTV5 496 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 TJP1Q07157 1748 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 NUP188Q5SRE5 1749 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 PDRG1Q9NUG6 133 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 PCDH11XQ9BZA7 1347 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 PCDH11YQ9BZA8 1340 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 H7C1W4 665 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 ME3Q16798 604 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 SLFNL1Q499Z3 407 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 TCEANC2Q96MN5 208 aa16.1■□□□□ 0.17
CCDC3-202ENST00000378839 PAPPAQ13219 1627 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 SYT1P21579 422 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 NASPP49321 788 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-202ENST00000378839 CCDC83Q8IWF9 413 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 ABCA3Q99758 1704 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 NKX1-1Q15270 411 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-202ENST00000378839 VPS53Q5VIR6 699 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 ATG9AQ7Z3C6 839 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 USP48Q86UV5 1035 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 NECAB1Q8N987 351 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 SEC62Q99442 399 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms