RNA–Protein interactions for RNA: ENST00000376957.6

SRM-201, Transcript of spermidine synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRM, Length 1,266 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-201ENST00000376957 TSPYL6Q8N831 410 aa28.41■■■□□ 2.14
SRM-201ENST00000376957 RNF181Q9P0P0 153 aa28.41■■■□□ 2.14
SRM-201ENST00000376957 ANKRD36CQ5JPF3 1778 aa28.41■■■□□ 2.14
SRM-201ENST00000376957 RIC1Q4ADV7 1423 aa28.41■■■□□ 2.14
SRM-201ENST00000376957 FANCIQ9NVI1 1328 aa28.41■■■□□ 2.14
SRM-201ENST00000376957 COL11A2P13942 1736 aaPredicted RBP28.4■■■□□ 2.14
SRM-201ENST00000376957 ADCY9O60503 1353 aa28.4■■■□□ 2.14
SRM-201ENST00000376957 ZNF219Q9P2Y4 722 aaPredicted RBP28.4■■■□□ 2.14
SRM-201ENST00000376957 LMNB1P20700 586 aa28.39■■■□□ 2.14
SRM-201ENST00000376957 RBM17Q96I25 401 aaKnown RBP28.39■■■□□ 2.14
SRM-201ENST00000376957 SH3TC1Q8TE82 1336 aa28.39■■■□□ 2.13
SRM-201ENST00000376957 HSP90B1P14625 803 aaKnown RBP28.38■■■□□ 2.13
SRM-201ENST00000376957 CRY2Q49AN0 593 aa28.38■■■□□ 2.13
SRM-201ENST00000376957 SLC10A5Q5PT55 438 aa28.38■■■□□ 2.13
SRM-201ENST00000376957 TMX4Q9H1E5 349 aaPredicted RBP28.38■■■□□ 2.13
SRM-201ENST00000376957 PHAXQ9H814 394 aaKnown RBP28.38■■■□□ 2.13
SRM-201ENST00000376957 ABCC12Q96J65 1359 aa28.37■■■□□ 2.13
SRM-201ENST00000376957 ZNF526Q8TF50 670 aaPredicted RBP28.36■■■□□ 2.13
SRM-201ENST00000376957 ARFGEF2Q9Y6D5 1785 aa28.35■■■□□ 2.13
SRM-201ENST00000376957 TRIM28Q13263 835 aaKnown RBP28.35■■■□□ 2.13
SRM-201ENST00000376957 CCDC93Q567U6 631 aa28.35■■■□□ 2.13
SRM-201ENST00000376957 DIEXFQ68CQ4 756 aaKnown RBP28.35■■■□□ 2.13
SRM-201ENST00000376957 TAOK3Q9H2K8 898 aa28.35■■■□□ 2.13
SRM-201ENST00000376957 ZC3H4Q9UPT8 1303 aaKnown RBP28.35■■■□□ 2.13
SRM-201ENST00000376957 CACNA1SQ13698 1873 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 SLC4A2P04920 1241 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 RASSF7Q02833 373 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 GRIPAP1Q4V328 841 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 RTKN2Q8IZC4 609 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 ISCA1Q9BUE6 129 aa28.34■■■□□ 2.13
SRM-201ENST00000376957 ATP5J2-PTCD1G3V325 749 aa28.33■■■□□ 2.13
SRM-201ENST00000376957 HOXA10P31260 410 aaPredicted RBP28.33■■■□□ 2.13
SRM-201ENST00000376957 NEXNQ0ZGT2 675 aa28.33■■■□□ 2.13
SRM-201ENST00000376957 CC2D2BQ6DHV5 1058 aa28.33■■■□□ 2.13
SRM-201ENST00000376957 CRAMP1Q96RY5 1269 aa28.33■■■□□ 2.13
SRM-201ENST00000376957 SLX4Q8IY92 1834 aa28.33■■■□□ 2.13
SRM-201ENST00000376957 EXOSC9Q06265 439 aaKnown RBP28.32■■■□□ 2.12
SRM-201ENST00000376957 KDM2BQ8NHM5 1336 aa28.32■■■□□ 2.12
SRM-201ENST00000376957 LTBP3Q9NS15 1303 aa28.32■■■□□ 2.12
SRM-201ENST00000376957 KSR2Q6VAB6 950 aa28.31■■■□□ 2.12
SRM-201ENST00000376957 SBF1O95248 1867 aa28.31■■■□□ 2.12
SRM-201ENST00000376957 VAMP4O75379 141 aa28.3■■■□□ 2.12
SRM-201ENST00000376957 MYD88Q99836 296 aa28.3■■■□□ 2.12
SRM-201ENST00000376957 METTL22Q9BUU2 404 aaPredicted RBP28.3■■■□□ 2.12
SRM-201ENST00000376957 TNRC6CQ9HCJ0 1690 aaKnown RBP28.29■■■□□ 2.12
SRM-201ENST00000376957 NFKBIEO00221 500 aa28.29■■■□□ 2.12
SRM-201ENST00000376957 CCDC191Q8NCU4 936 aa28.29■■■□□ 2.12
SRM-201ENST00000376957 MAP3K2Q9Y2U5 619 aa28.29■■■□□ 2.12
SRM-201ENST00000376957 CACNA1FO60840 1977 aa28.28■■■□□ 2.12
SRM-201ENST00000376957 TCERG1O14776 1098 aaKnown RBP28.28■■■□□ 2.12
SRM-201ENST00000376957 HCLS1P14317 486 aaPredicted RBP28.28■■■□□ 2.12
SRM-201ENST00000376957 DDX46Q7L014 1031 aaKnown RBP28.28■■■□□ 2.12
SRM-201ENST00000376957 C7orf43Q8WVR3 580 aa28.28■■■□□ 2.12
SRM-201ENST00000376957 FER1L6Q2WGJ9 1857 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 PI4KAP2A4QPH2 592 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 E9PSI1 815 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 DPY19L2Q6NUT2 758 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 PI4KAP1Q8N8J0 262 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 FAM89AQ96GI7 184 aa28.27■■■□□ 2.12
SRM-201ENST00000376957 CWC25Q9NXE8 425 aaPredicted RBP28.27■■■□□ 2.12
SRM-201ENST00000376957 ZBTB38Q8NAP3 1195 aaPredicted RBP28.26■■■□□ 2.11
SRM-201ENST00000376957 ZNF521Q96K83 1311 aa28.25■■■□□ 2.11
SRM-201ENST00000376957 PPEF1O14829 653 aaPredicted RBP28.25■■■□□ 2.11
SRM-201ENST00000376957 BBOX1O75936 387 aa28.25■■■□□ 2.11
SRM-201ENST00000376957 FKBP4Q02790 459 aaKnown RBP eCLIP28.25■■■□□ 2.11
SRM-201ENST00000376957 SPINK5Q9NQ38 1064 aaPredicted RBP28.25■■■□□ 2.11
SRM-201ENST00000376957 FLIIQ13045 1269 aa28.24■■■□□ 2.11
SRM-201ENST00000376957 FKBP5Q13451 457 aaPredicted RBP28.24■■■□□ 2.11
SRM-201ENST00000376957 CCDC88AQ3V6T2 1871 aa28.23■■■□□ 2.11
SRM-201ENST00000376957 IRS4O14654 1257 aaPredicted RBP28.22■■■□□ 2.11
SRM-201ENST00000376957 C1QTNF8P60827 252 aa28.22■■■□□ 2.11
SRM-201ENST00000376957 RTL5Q5HYW3 569 aaPredicted RBP28.22■■■□□ 2.11
SRM-201ENST00000376957 TMC4Q7Z404 712 aa28.22■■■□□ 2.11
SRM-201ENST00000376957 PCCAP05165 728 aaPredicted RBP28.21■■■□□ 2.11
SRM-201ENST00000376957 C3orf67Q6ZVT6 689 aa28.21■■■□□ 2.11
SRM-201ENST00000376957 C16orf71Q8IYS4 520 aaPredicted RBP28.21■■■□□ 2.11
SRM-201ENST00000376957 SYNE4Q8N205 404 aa28.21■■■□□ 2.11
SRM-201ENST00000376957 ZNF428Q96B54 188 aa28.21■■■□□ 2.11
SRM-201ENST00000376957 PSMD1Q99460 953 aa28.2■■■□□ 2.1
SRM-201ENST00000376957 ABCC4O15439 1325 aa28.19■■■□□ 2.1
SRM-201ENST00000376957 GLTPD2A6NH11 291 aa28.19■■■□□ 2.1
SRM-201ENST00000376957 GRAPQ13588 217 aa28.19■■■□□ 2.1
SRM-201ENST00000376957 SF3B3Q15393 1217 aaKnown RBP28.19■■■□□ 2.1
SRM-201ENST00000376957 GRAPLQ8TC17 118 aaPredicted RBP28.19■■■□□ 2.1
SRM-201ENST00000376957 ATP6V0A2Q9Y487 856 aa28.19■■■□□ 2.1
SRM-201ENST00000376957 G2E3Q7L622 706 aa28.18■■■□□ 2.1
SRM-201ENST00000376957 DICER1Q9UPY3 1922 aaKnown RBP28.18■■■□□ 2.1
SRM-201ENST00000376957 PDE8AO60658 829 aa28.17■■■□□ 2.1
SRM-201ENST00000376957 SUPT20HQ8NEM7 779 aa28.17■■■□□ 2.1
SRM-201ENST00000376957 DNAAF4Q8WXU2 420 aa28.17■■■□□ 2.1
SRM-201ENST00000376957 JDP2Q8WYK2 163 aa28.17■■■□□ 2.1
SRM-201ENST00000376957 TIAM2Q8IVF5 1701 aa28.16■■■□□ 2.1
SRM-201ENST00000376957 SP8Q8IXZ3 490 aa28.16■■■□□ 2.1
SRM-201ENST00000376957 MIER1Q8N108 512 aa28.16■■■□□ 2.1
SRM-201ENST00000376957 ZNF277Q9NRM2 450 aaPredicted RBP28.16■■■□□ 2.1
SRM-201ENST00000376957 LAMB2P55268 1798 aa28.16■■■□□ 2.1
SRM-201ENST00000376957 IARSP41252 1262 aaKnown RBP28.15■■■□□ 2.1
SRM-201ENST00000376957 PRELPP51888 382 aa28.15■■■□□ 2.1
SRM-201ENST00000376957 SLFN5Q08AF3 891 aa28.15■■■□□ 2.1
SRM-201ENST00000376957 CCDC152Q4G0S7 254 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms