RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 DDX46Q7L014 1031 aaKnown RBP15.76■□□□□ 0.11
COL4A1-201ENST00000375820 ARID5AQ03989 594 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 UBE3BQ7Z3V4 1068 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 TRIM47Q96LD4 638 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 MFSD6Q6ZSS7 791 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 PPP1R14CQ8TAE6 165 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 STX8Q9UNK0 236 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 CASKIN1Q8WXD9 1431 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 HMGB1P09429 215 aaKnown RBP15.75■□□□□ 0.11
COL4A1-201ENST00000375820 PICALMQ13492 652 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 KCNH5Q8NCM2 988 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 ATAD2Q6PL18 1390 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 WDR97A6NE52 1622 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 GNG11P61952 73 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 SYNCQ9H7C4 482 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 CCDC61Q9Y6R9 512 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 FSD2A1L4K1 749 aa15.75■□□□□ 0.11
COL4A1-201ENST00000375820 RNF41Q9H4P4 317 aaPredicted RBP15.75■□□□□ 0.11
COL4A1-201ENST00000375820 EHMT1Q9H9B1 1298 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 PODXL2Q9NZ53 605 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 UBA7P41226 1012 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 NGLY1Q96IV0 654 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 CEP135Q66GS9 1140 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 KIF2AO00139 706 aaPredicted RBP15.74■□□□□ 0.11
COL4A1-201ENST00000375820 TRIM27P14373 513 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 RRAGBQ5VZM2 374 aa15.74■□□□□ 0.11
COL4A1-201ENST00000375820 A0A1W2PRG0 241 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 TAOK3Q9H2K8 898 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 CETN1Q12798 172 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 FLIIQ13045 1269 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 EXOC1Q9NV70 894 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 SBNO2Q9Y2G9 1366 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 MRPS9P82933 396 aaKnown RBP15.73■□□□□ 0.11
COL4A1-201ENST00000375820 CHRNA2Q15822 529 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 VTI1AQ96AJ9 217 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 EVI5LQ96CN4 794 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 ACSBG1Q96GR2 724 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 NAIPQ13075 1403 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 HCLS1P14317 486 aaPredicted RBP15.73■□□□□ 0.11
COL4A1-201ENST00000375820 MCM3P25205 808 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 HEATR3Q7Z4Q2 680 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 NEK1Q96PY6 1258 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 GRIPAP1Q4V328 841 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 OTUD6BQ8N6M0 293 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 FAM212AQ96EL1 285 aa15.73■□□□□ 0.11
COL4A1-201ENST00000375820 HFM1A2PYH4 1435 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 N4BP3O15049 544 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 CNPY2Q9Y2B0 182 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 MARCKSP29966 332 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-201ENST00000375820 ZNF165P49910 485 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL4A1-201ENST00000375820 V9GYY5 206 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-201ENST00000375820 SMIM23A6NLE4 172 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 AMPD3Q01432 767 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 PPP1R42Q7Z4L9 355 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 NAA15Q9BXJ9 866 aaKnown RBP15.72■□□□□ 0.11
COL4A1-201ENST00000375820 SLC52A1Q9NWF4 448 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 MRVI1Q9Y6F6 885 aa15.72■□□□□ 0.11
COL4A1-201ENST00000375820 CTAGE5O15320 804 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 WDHD1O75717 1129 aaPredicted RBP15.71■□□□□ 0.11
COL4A1-201ENST00000375820 PLS1Q14651 629 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 TBCAO75347 108 aaKnown RBP15.71■□□□□ 0.11
COL4A1-201ENST00000375820 MXRA7P84157 204 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 PDE4BQ07343 736 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 CABP5Q9NP86 173 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 HYPKQ9NX55 129 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 IKBKGQ9Y6K9 419 aa15.71■□□□□ 0.11
COL4A1-201ENST00000375820 KLF18A0A0U1RQI7 1052 aa15.71■□□□□ 0.1
COL4A1-201ENST00000375820 PI4KAP2A4QPH2 592 aa15.71■□□□□ 0.1
COL4A1-201ENST00000375820 CCDC174Q6PII3 467 aa15.71■□□□□ 0.1
COL4A1-201ENST00000375820 CHST3Q7LGC8 479 aa15.71■□□□□ 0.1
COL4A1-201ENST00000375820 PI4KAP1Q8N8J0 262 aa15.71■□□□□ 0.1
COL4A1-201ENST00000375820 PABPN1LA6NDY0 278 aaKnown RBP15.7■□□□□ 0.1
COL4A1-201ENST00000375820 TSPY3P0CV98 308 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 TSPY8P0CW00 308 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 FERP16591 822 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 MICALCLQ6ZW33 695 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 TSNARE1Q96NA8 513 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 CWC25Q9NXE8 425 aaPredicted RBP15.7■□□□□ 0.1
COL4A1-201ENST00000375820 DDX19AQ9NUU7 478 aaKnown RBP15.7■□□□□ 0.1
COL4A1-201ENST00000375820 ZSCAN23Q3MJ62 389 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 JAG2Q9Y219 1238 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 KIF5BP33176 963 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 CEBPAP49715 358 aaPredicted RBP15.7■□□□□ 0.1
COL4A1-201ENST00000375820 NCOA7Q8NI08 942 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 BRF1Q92994 677 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 ECHDC1Q9NTX5 307 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 DBF4Q9UBU7 674 aaPredicted RBP15.7■□□□□ 0.1
COL4A1-201ENST00000375820 ZBTB21Q9ULJ3 1066 aa15.7■□□□□ 0.1
COL4A1-201ENST00000375820 IGHDP01880 384 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 NKTRP30414 1462 aaKnown RBP15.69■□□□□ 0.1
COL4A1-201ENST00000375820 KRT13P13646 458 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 KIAA0753Q2KHM9 967 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 ANO6Q4KMQ2 910 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 SLF2Q8IX21 1173 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 EXOC5O00471 708 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 AKR1B10O60218 316 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 HSF2BPO75031 334 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 STAT6P42226 847 aa15.69■□□□□ 0.1
COL4A1-201ENST00000375820 UBASH3AP57075 661 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms