RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 LARP1Q6PKG0 1096 aaKnown RBP13.27□□□□□ -0.29
CCDC40-203ENST00000374877 RASEFQ8IZ41 740 aa13.27□□□□□ -0.29
CCDC40-203ENST00000374877 ZNF710Q8N1W2 664 aa13.27□□□□□ -0.29
CCDC40-203ENST00000374877 SPC24Q8NBT2 197 aa13.27□□□□□ -0.29
CCDC40-203ENST00000374877 LIMCH1Q9UPQ0 1083 aa13.27□□□□□ -0.29
CCDC40-203ENST00000374877 CWC27Q6UX04 472 aaKnown RBP13.26□□□□□ -0.29
CCDC40-203ENST00000374877 ATP6V1DQ9Y5K8 247 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 RUFY3Q7L099 469 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 IFNL2Q8IZJ0 200 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 PLCH1Q4KWH8 1693 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 SGSM2O43147 1006 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 IL2RBP14784 551 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 PHKG2P15735 406 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 STRN4Q9NRL3 753 aa13.26□□□□□ -0.29
CCDC40-203ENST00000374877 ZHX1Q9UKY1 873 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-203ENST00000374877 CBX1P83916 185 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 DNM1Q05193 864 aaKnown RBP13.25□□□□□ -0.29
CCDC40-203ENST00000374877 CCDC83Q8IWF9 413 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 IL17RAQ96F46 866 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 USP44Q9H0E7 712 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 NRAPQ86VF7 1730 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 SPATA31A6Q5VVP1 1343 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 NWD2Q9ULI1 1742 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 CASTP20810 708 aaKnown RBP13.25□□□□□ -0.29
CCDC40-203ENST00000374877 VPS37CA5D8V6 355 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-203ENST00000374877 PPP1R42Q7Z4L9 355 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 TTC14Q96N46 770 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 CHMP3Q9Y3E7 222 aa13.25□□□□□ -0.29
CCDC40-203ENST00000374877 MRC1P22897 1456 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 AOX1Q06278 1338 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 DISP2A7MBM2 1401 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 SLIT2O94813 1529 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 LARGE1O95461 756 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 CNTROBQ8N137 903 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 PCDH11XQ9BZA7 1347 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 PCDH11YQ9BZA8 1340 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 GJB2P29033 226 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 CHAF1AQ13111 956 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-203ENST00000374877 RHPN1Q8TCX5 695 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 SPTLC3Q9NUV7 552 aa13.24□□□□□ -0.29
CCDC40-203ENST00000374877 PPP4R3BQ5MIZ7 849 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 LSG1Q9H089 658 aaKnown RBP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 LGR6Q9HBX8 967 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 PYCARDQ9ULZ3 195 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 EPB41L2O43491 1005 aaKnown RBP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 GTF2F1P35269 517 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 TEFQ10587 303 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 ZCRB1Q8TBF4 217 aaKnown RBP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 PI4K2BQ8TCG2 481 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 BCL2L12Q9HB09 334 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 KDM6AO15550 1401 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 SRGAP3O43295 1099 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 AP5Z1O43299 807 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 MPRIPQ6WCQ1 1025 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 DDX54Q8TDD1 881 aaKnown RBP13.23□□□□□ -0.29
CCDC40-203ENST00000374877 SSH3Q8TE77 659 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 DCAF5Q96JK2 942 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 KDM3BQ7LBC6 1761 aa13.23□□□□□ -0.29
CCDC40-203ENST00000374877 CYP27B1O15528 508 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 JAKMIP1Q96N16 626 aaKnown RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 FUCA2Q9BTY2 467 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 TUBGCP6Q96RT7 1819 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 SIPA1L3O60292 1781 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 RAB11FIP3O75154 756 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 ADAMTS2O95450 1211 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 OS9Q13438 667 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 NKX1-1Q15270 411 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 KIAA1524Q8TCG1 905 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 CDCA7Q9BWT1 371 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 KCNF1Q9H3M0 494 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 DIAPH3Q9NSV4 1193 aa13.22□□□□□ -0.29
CCDC40-203ENST00000374877 THRAP3Q9Y2W1 955 aaKnown RBP13.22□□□□□ -0.29
CCDC40-203ENST00000374877 SCN11AQ9UI33 1791 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 KIF1BPQ96EK5 621 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 PHAXQ9H814 394 aaKnown RBP13.21□□□□□ -0.29
CCDC40-203ENST00000374877 MTMR6Q9Y217 621 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 GOLGA6L6A8MZA4 724 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 CCDC192P0DO97 292 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 HDGFL1Q5TGJ6 251 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 CHMP4AQ9BY43 222 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 PDRG1Q9NUG6 133 aa13.21□□□□□ -0.29
CCDC40-203ENST00000374877 RIOK3O14730 519 aaKnown RBP13.21□□□□□ -0.3
CCDC40-203ENST00000374877 HOXB7P09629 217 aa13.21□□□□□ -0.3
CCDC40-203ENST00000374877 PRPF40BQ6NWY9 871 aaKnown RBP13.21□□□□□ -0.3
CCDC40-203ENST00000374877 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-203ENST00000374877 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-203ENST00000374877 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-203ENST00000374877 PDCL2Q8N4E4 241 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 HYPKQ9NX55 129 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 SPDYE4A6NLX3 237 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 EIF2S2P20042 333 aaKnown RBP13.2□□□□□ -0.3
CCDC40-203ENST00000374877 CAMK4Q16566 473 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 ATP2B3Q16720 1220 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 FERMT3Q86UX7 667 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 NECAB1Q8N987 351 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 WNK3Q9BYP7 1800 aa13.2□□□□□ -0.3
CCDC40-203ENST00000374877 ZSCAN20P17040 1043 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-203ENST00000374877 DMTNQ08495 405 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 ADCK5Q3MIX3 580 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 SLC52A2Q9HAB3 445 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms