RNA–Protein interactions for RNA: ENST00000374399.8

NIPAL3-204, Transcript of NIPA like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPAL3, Length 1,711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-204ENST00000374399 ZNF34Q8IZ26 560 aa19.48■□□□□ 0.71
NIPAL3-204ENST00000374399 CCNL1Q9UK58 526 aaPredicted RBP19.48■□□□□ 0.71
NIPAL3-204ENST00000374399 UBN2Q6ZU65 1347 aa19.47■□□□□ 0.71
NIPAL3-204ENST00000374399 RC3H1Q5TC82 1133 aaKnown RBP19.47■□□□□ 0.71
NIPAL3-204ENST00000374399 LRRCC1Q9C099 1032 aa19.47■□□□□ 0.71
NIPAL3-204ENST00000374399 GPTP24298 496 aa19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 RTL5Q5HYW3 569 aaPredicted RBP19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 SMIM5Q71RC9 77 aa19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 AMIGO3Q86WK7 504 aa19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 LRRC4BQ9NT99 713 aa19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 C4BP0C0L5 1744 aa19.46■□□□□ 0.71
NIPAL3-204ENST00000374399 RAB11FIP3O75154 756 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 HSP90AB3PQ58FF7 597 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 TRIM37O94972 964 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 PCCAP05165 728 aaPredicted RBP19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 RXRBP28702 533 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 POTEAQ6S8J7 498 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 SYNE4Q8N205 404 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 RHPN1Q8TCX5 695 aa19.45■□□□□ 0.7
NIPAL3-204ENST00000374399 TUBGCP6Q96RT7 1819 aa19.44■□□□□ 0.7
NIPAL3-204ENST00000374399 ZBTB38Q8NAP3 1195 aaPredicted RBP19.44■□□□□ 0.7
NIPAL3-204ENST00000374399 KLHDC4Q8TBB5 520 aa19.44■□□□□ 0.7
NIPAL3-204ENST00000374399 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.44■□□□□ 0.7
NIPAL3-204ENST00000374399 SCN7AQ01118 1682 aa19.44■□□□□ 0.7
NIPAL3-204ENST00000374399 RPS6KA4O75676 772 aa19.43■□□□□ 0.7
NIPAL3-204ENST00000374399 GSPT1P15170 499 aaKnown RBP19.43■□□□□ 0.7
NIPAL3-204ENST00000374399 BMP2KLQ5H9B9 411 aa19.43■□□□□ 0.7
NIPAL3-204ENST00000374399 LMBR1LQ6UX01 489 aa19.43■□□□□ 0.7
NIPAL3-204ENST00000374399 FAM89AQ96GI7 184 aa19.43■□□□□ 0.7
NIPAL3-204ENST00000374399 PTPN12Q05209 780 aaKnown RBP19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 PLA2G12BQ9BX93 195 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 IL1RAPL2Q9NP60 686 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 COPRSQ9NQ92 184 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 SASH1O94885 1247 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 NPM2Q86SE8 214 aaKnown RBP19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 KIF1BPQ96EK5 621 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 BCL11AQ9H165 835 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 OSBPL3Q9H4L5 887 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 CDHR2Q9BYE9 1310 aa19.42■□□□□ 0.7
NIPAL3-204ENST00000374399 C4AP0C0L4 1744 aa19.41■□□□□ 0.7
NIPAL3-204ENST00000374399 SEC24BO95487 1268 aa19.41■□□□□ 0.7
NIPAL3-204ENST00000374399 BCL2L12Q9HB09 334 aa19.41■□□□□ 0.7
NIPAL3-204ENST00000374399 PDE1AP54750 535 aa19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 HSP90AB4PQ58FF6 505 aa19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 TTC22Q5TAA0 569 aa19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 ZBTB47Q9UFB7 747 aaPredicted RBP19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 MYH3P11055 1940 aa19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 UBR3Q6ZT12 1888 aa19.4■□□□□ 0.7
NIPAL3-204ENST00000374399 SUSD4Q5VX71 490 aa19.39■□□□□ 0.7
NIPAL3-204ENST00000374399 PROM2Q8N271 834 aa19.39■□□□□ 0.7
NIPAL3-204ENST00000374399 GNPATO15228 680 aa19.39■□□□□ 0.69
NIPAL3-204ENST00000374399 CSF1RP07333 972 aa19.39■□□□□ 0.69
NIPAL3-204ENST00000374399 DDX60Q8IY21 1712 aaKnown RBP19.38■□□□□ 0.69
NIPAL3-204ENST00000374399 SIL1Q9H173 461 aa19.38■□□□□ 0.69
NIPAL3-204ENST00000374399 STAP2Q9UGK3 403 aa19.38■□□□□ 0.69
NIPAL3-204ENST00000374399 TSHZ3Q63HK5 1081 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 CLEC4GQ6UXB4 293 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 NARFQ9UHQ1 456 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 TRMT112Q9UI30 125 aaKnown RBP19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 TNS1Q9HBL0 1735 aaKnown RBP19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 RGL2O15211 777 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 MX1P20591 662 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 NUTM1Q86Y26 1132 aa19.37■□□□□ 0.69
NIPAL3-204ENST00000374399 OS9Q13438 667 aaPredicted RBP19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 SLC27A3Q5K4L6 730 aa19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 ERC1Q8IUD2 1116 aa19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 ARHGEF1Q92888 912 aaKnown RBP19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 SRP68Q9UHB9 627 aaKnown RBP19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 RTCBQ9Y3I0 505 aaKnown RBP19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 LAMB2P55268 1798 aa19.36■□□□□ 0.69
NIPAL3-204ENST00000374399 IRS4O14654 1257 aaPredicted RBP19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 NTSR2O95665 410 aa19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 G3BP1Q13283 466 aaKnown RBP eCLIP19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 COL24A1Q17RW2 1714 aa19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 PARP10Q53GL7 1025 aa19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 ATG9AQ7Z3C6 839 aa19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 NIP7Q9Y221 180 aaKnown RBP eCLIP19.35■□□□□ 0.69
NIPAL3-204ENST00000374399 USPL1Q5W0Q7 1092 aa19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 TTLL11Q8NHH1 800 aa19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 USP42Q9H9J4 1324 aaKnown RBP19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 EAF2Q96CJ1 260 aaPredicted RBP19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 ZNF594Q96JF6 807 aaPredicted RBP19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 CHMP3Q9Y3E7 222 aa19.34■□□□□ 0.69
NIPAL3-204ENST00000374399 SDSP20132 328 aa19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 TXNRD1Q16881 649 aa19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 TBC1D9BQ66K14 1250 aa19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 PI4K2BQ8TCG2 481 aa19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 UTP14AQ9BVJ6 771 aaKnown RBP19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 ZNF652Q9Y2D9 606 aa19.33■□□□□ 0.68
NIPAL3-204ENST00000374399 AOX1Q06278 1338 aa19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 PLSCR1O15162 318 aa19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 CTSWP56202 376 aa19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 CCDC85AQ96PX6 553 aaPredicted RBP19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 CASZ1Q86V15 1759 aa19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 SH3TC1Q8TE82 1336 aa19.32■□□□□ 0.68
NIPAL3-204ENST00000374399 PDE8AO60658 829 aa19.31■□□□□ 0.68
NIPAL3-204ENST00000374399 CLASRPQ8N2M8 674 aaKnown RBP19.31■□□□□ 0.68
NIPAL3-204ENST00000374399 AK7Q96M32 723 aa19.31■□□□□ 0.68
NIPAL3-204ENST00000374399 GREM2Q9H772 168 aa19.31■□□□□ 0.68
NIPAL3-204ENST00000374399 FAM177BA6PVY3 158 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms