RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DICER1Q9UPY3 1922 aaKnown RBP28.22■■■□□ 2.11
CCDC28B-201ENST00000373602 HSP90AB3PQ58FF7 597 aa28.22■■■□□ 2.11
CCDC28B-201ENST00000373602 HOXA10P31260 410 aaPredicted RBP28.21■■■□□ 2.11
CCDC28B-201ENST00000373602 C16orf71Q8IYS4 520 aaPredicted RBP28.21■■■□□ 2.11
CCDC28B-201ENST00000373602 RBM46Q8TBY0 533 aaKnown RBP28.21■■■□□ 2.11
CCDC28B-201ENST00000373602 UTP14AQ9BVJ6 771 aaKnown RBP28.21■■■□□ 2.11
CCDC28B-201ENST00000373602 DBF4Q9UBU7 674 aaPredicted RBP28.21■■■□□ 2.11
CCDC28B-201ENST00000373602 TCIRG1Q13488 830 aa28.19■■■□□ 2.1
CCDC28B-201ENST00000373602 SLC10A5Q5PT55 438 aa28.19■■■□□ 2.1
CCDC28B-201ENST00000373602 OLFM4Q6UX06 510 aa28.19■■■□□ 2.1
CCDC28B-201ENST00000373602 RPGRQ92834 1020 aaKnown RBP28.19■■■□□ 2.1
CCDC28B-201ENST00000373602 ANP32CO43423 234 aa28.18■■■□□ 2.1
CCDC28B-201ENST00000373602 DPY19L2Q6NUT2 758 aa28.18■■■□□ 2.1
CCDC28B-201ENST00000373602 RTKN2Q8IZC4 609 aa28.18■■■□□ 2.1
CCDC28B-201ENST00000373602 ANKRD36CQ5JPF3 1778 aa28.18■■■□□ 2.1
CCDC28B-201ENST00000373602 RNF123Q5XPI4 1314 aa28.18■■■□□ 2.1
CCDC28B-201ENST00000373602 FKBP4Q02790 459 aaKnown RBP eCLIP28.17■■■□□ 2.1
CCDC28B-201ENST00000373602 NLRP10Q86W26 655 aa28.17■■■□□ 2.1
CCDC28B-201ENST00000373602 C3orf67Q6ZVT6 689 aa28.16■■■□□ 2.1
CCDC28B-201ENST00000373602 PLBD2Q8NHP8 589 aa28.16■■■□□ 2.1
CCDC28B-201ENST00000373602 NLRP3Q96P20 1036 aa28.16■■■□□ 2.1
CCDC28B-201ENST00000373602 HYPKQ9NX55 129 aa28.16■■■□□ 2.1
CCDC28B-201ENST00000373602 VEGFAP15692 232 aaPredicted RBP28.15■■■□□ 2.1
CCDC28B-201ENST00000373602 ANKRD13DQ6ZTN6 518 aa28.15■■■□□ 2.1
CCDC28B-201ENST00000373602 RBM17Q96I25 401 aaKnown RBP28.15■■■□□ 2.1
CCDC28B-201ENST00000373602 CRAMP1Q96RY5 1269 aa28.15■■■□□ 2.1
CCDC28B-201ENST00000373602 MRS2Q9HD23 443 aa28.15■■■□□ 2.1
CCDC28B-201ENST00000373602 CCDC27Q2M243 656 aa28.14■■■□□ 2.1
CCDC28B-201ENST00000373602 CC2D2BQ6DHV5 1058 aa28.14■■■□□ 2.1
CCDC28B-201ENST00000373602 SNED1Q8TER0 1413 aa28.14■■■□□ 2.1
CCDC28B-201ENST00000373602 FSTL1Q12841 308 aa28.13■■■□□ 2.09
CCDC28B-201ENST00000373602 WDR90Q96KV7 1748 aa28.12■■■□□ 2.09
CCDC28B-201ENST00000373602 ELL2O00472 640 aaPredicted RBP28.12■■■□□ 2.09
CCDC28B-201ENST00000373602 ZNF277Q9NRM2 450 aaPredicted RBP28.12■■■□□ 2.09
CCDC28B-201ENST00000373602 POTECB2RU33 542 aa28.11■■■□□ 2.09
CCDC28B-201ENST00000373602 SYNE4Q8N205 404 aa28.11■■■□□ 2.09
CCDC28B-201ENST00000373602 C8orf58Q8NAV2 365 aa28.11■■■□□ 2.09
CCDC28B-201ENST00000373602 TRMT112Q9UI30 125 aaKnown RBP28.11■■■□□ 2.09
CCDC28B-201ENST00000373602 APLP1P51693 650 aa28.1■■■□□ 2.09
CCDC28B-201ENST00000373602 NCBP3Q53F19 620 aaKnown RBP28.1■■■□□ 2.09
CCDC28B-201ENST00000373602 PSMD1Q99460 953 aa28.1■■■□□ 2.09
CCDC28B-201ENST00000373602 ISCA1Q9BUE6 129 aa28.1■■■□□ 2.09
CCDC28B-201ENST00000373602 SH3TC1Q8TE82 1336 aa28.1■■■□□ 2.09
CCDC28B-201ENST00000373602 GRIPAP1Q4V328 841 aa28.09■■■□□ 2.09
CCDC28B-201ENST00000373602 WWC1Q8IX03 1113 aa28.09■■■□□ 2.09
CCDC28B-201ENST00000373602 PPEF1O14829 653 aaPredicted RBP28.08■■■□□ 2.09
CCDC28B-201ENST00000373602 HCLS1P14317 486 aaPredicted RBP28.08■■■□□ 2.09
CCDC28B-201ENST00000373602 IARSP41252 1262 aaKnown RBP28.08■■■□□ 2.09
CCDC28B-201ENST00000373602 SMC1BQ8NDV3 1235 aa28.08■■■□□ 2.09
CCDC28B-201ENST00000373602 DDNO94850 711 aaPredicted RBP28.07■■■□□ 2.08
CCDC28B-201ENST00000373602 CHMP4AQ9BY43 222 aa28.06■■■□□ 2.08
CCDC28B-201ENST00000373602 PHAXQ9H814 394 aaKnown RBP28.06■■■□□ 2.08
CCDC28B-201ENST00000373602 ATP5J2-PTCD1G3V325 749 aa28.05■■■□□ 2.08
CCDC28B-201ENST00000373602 ABCC4O15439 1325 aa28.05■■■□□ 2.08
CCDC28B-201ENST00000373602 TRIM28Q13263 835 aaKnown RBP28.05■■■□□ 2.08
CCDC28B-201ENST00000373602 LAMB2P55268 1798 aa28.04■■■□□ 2.08
CCDC28B-201ENST00000373602 CCDC30Q5VVM6 783 aa28.04■■■□□ 2.08
CCDC28B-201ENST00000373602 TSPYL6Q8N831 410 aa28.04■■■□□ 2.08
CCDC28B-201ENST00000373602 TSR2Q969E8 191 aaKnown RBP28.04■■■□□ 2.08
CCDC28B-201ENST00000373602 IL16Q14005 1332 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 TCERG1O14776 1098 aaKnown RBP28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 GOLGA2Q08379 1002 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 RIC3Q7Z5B4 369 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 SLC51AQ86UW1 340 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 ZNF428Q96B54 188 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 ATP6V0A2Q9Y487 856 aa28.03■■■□□ 2.08
CCDC28B-201ENST00000373602 FZD9O00144 591 aa28.02■■■□□ 2.08
CCDC28B-201ENST00000373602 L3MBTL3Q96JM7 780 aaPredicted RBP28.02■■■□□ 2.08
CCDC28B-201ENST00000373602 ZNF541Q9H0D2 1346 aa28.01■■■□□ 2.07
CCDC28B-201ENST00000373602 BBOX1O75936 387 aa28.01■■■□□ 2.07
CCDC28B-201ENST00000373602 DDX46Q7L014 1031 aaKnown RBP28■■■□□ 2.07
CCDC28B-201ENST00000373602 JDP2Q8WYK2 163 aa28■■■□□ 2.07
CCDC28B-201ENST00000373602 FAM89AQ96GI7 184 aa28■■■□□ 2.07
CCDC28B-201ENST00000373602 TMX4Q9H1E5 349 aaPredicted RBP28■■■□□ 2.07
CCDC28B-201ENST00000373602 DDX60Q8IY21 1712 aaKnown RBP27.98■■■□□ 2.07
CCDC28B-201ENST00000373602 IQCA1LA6NCM1 817 aa27.98■■■□□ 2.07
CCDC28B-201ENST00000373602 GRAPQ13588 217 aa27.98■■■□□ 2.07
CCDC28B-201ENST00000373602 SP8Q8IXZ3 490 aa27.98■■■□□ 2.07
CCDC28B-201ENST00000373602 GRAPLQ8TC17 118 aaPredicted RBP27.98■■■□□ 2.07
CCDC28B-201ENST00000373602 SF3B3Q15393 1217 aaKnown RBP27.97■■■□□ 2.07
CCDC28B-201ENST00000373602 DNAJC5GQ8N7S2 189 aa27.97■■■□□ 2.07
CCDC28B-201ENST00000373602 COL4A5P29400 1685 aa27.97■■■□□ 2.07
CCDC28B-201ENST00000373602 CEP350Q5VT06 3117 aa27.96■■■□□ 2.07
CCDC28B-201ENST00000373602 DDX58O95786 925 aaKnown RBP27.96■■■□□ 2.07
CCDC28B-201ENST00000373602 MYD88Q99836 296 aa27.96■■■□□ 2.07
CCDC28B-201ENST00000373602 SCN4AP35499 1836 aa27.95■■■□□ 2.07
CCDC28B-201ENST00000373602 TWISTNBQ3B726 338 aaPredicted RBP27.95■■■□□ 2.06
CCDC28B-201ENST00000373602 WDR63Q8IWG1 891 aa27.95■■■□□ 2.06
CCDC28B-201ENST00000373602 LARGE2Q8N3Y3 721 aa27.95■■■□□ 2.06
CCDC28B-201ENST00000373602 IRS4O14654 1257 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 RTL5Q5HYW3 569 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 TMC4Q7Z404 712 aa27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 ZBTB38Q8NAP3 1195 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 CCDC191Q8NCU4 936 aa27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 METTL22Q9BUU2 404 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 RTFDC1Q9BY42 306 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 VPS33BQ9H267 617 aa27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 TAF1DQ9H5J8 278 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-201ENST00000373602 EIF6P56537 245 aaKnown RBP27.93■■■□□ 2.06
CCDC28B-201ENST00000373602 GPC2Q8N158 579 aa27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms