RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ZFYVE16Q7Z3T8 1539 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 KIF4BQ2VIQ3 1234 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 C8orf76Q96K31 380 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 RSPH14Q9UHP6 348 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 STARD3NLO95772 234 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 IFIT1P09914 478 aaKnown RBP10.27□□□□□ -0.77
SYNE1-209ENST00000367257 TAX1BP1Q86VP1 789 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 CTCFLQ8NI51 663 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-209ENST00000367257 FERMT1Q9BQL6 677 aa10.27□□□□□ -0.77
SYNE1-209ENST00000367257 SOS1Q07889 1333 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 ANKRD62A6NC57 917 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 CCDC175P0C221 793 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 ATP6V1AP38606 617 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 ZNF644Q9H582 1327 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 MICALL1Q8N3F8 863 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 HYPKQ9NX55 129 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 TMOD2Q9NZR1 351 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 NAIPQ13075 1403 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 AP1ARQ63HQ0 302 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 CACNA2D4Q7Z3S7 1137 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 TXNDC2Q86VQ3 553 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 SMARCC1Q92922 1105 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 TEX13AQ9BXU3 409 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 NSRP1Q9H0G5 558 aaKnown RBP10.26□□□□□ -0.77
SYNE1-209ENST00000367257 ABCA6Q8N139 1617 aa10.26□□□□□ -0.77
SYNE1-209ENST00000367257 SYCE3A1L190 88 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 A6NNZ2 444 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 BTBD11A6QL63 1104 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 RARSP54136 660 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 MAP3K12Q12852 859 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 TUBB8Q3ZCM7 444 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 IQCA1Q86XH1 822 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 NUP133Q8WUM0 1156 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 ANKRD36BQ8N2N9 1353 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 KIF5BP33176 963 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 CEBPZQ03701 1054 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 RPAINQ86UA6 219 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 EFCC1Q9HA90 598 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 RBM27Q9P2N5 1060 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 NEBLO76041 1014 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 BAG4O95429 457 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 IFFO1Q0D2I5 559 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 TSR2Q969E8 191 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 CCDC61Q9Y6R9 512 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 SCAF11Q99590 1463 aaKnown RBP10.25□□□□□ -0.77
SYNE1-209ENST00000367257 ZNF76P36508 570 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 TUBB2AQ13885 445 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 PAF1Q8N7H5 531 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 TUBB2BQ9BVA1 445 aa10.25□□□□□ -0.77
SYNE1-209ENST00000367257 IFT172Q9UG01 1749 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 HDAC1Q13547 482 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 USP37Q86T82 979 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 TTC12Q9H892 705 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 SSRP1Q08945 709 aaKnown RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 STK3Q13188 491 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 ATL3Q6DD88 541 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 CWC27Q6UX04 472 aaKnown RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 TMEM57Q8N5G2 664 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 SREK1Q8WXA9 508 aaKnown RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 SNX21Q969T3 373 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 PUS7Q96PZ0 661 aaKnown RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 WDR66Q8TBY9 1149 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 TMX1Q9H3N1 280 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 NOLC1Q14978 699 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 CAVIN4Q5BKX8 364 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 TMTC2Q8N394 836 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 ANKRD24Q8TF21 1146 aa10.24□□□□□ -0.77
SYNE1-209ENST00000367257 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 V9GYY5 206 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-209ENST00000367257 ZFYP08048 801 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-209ENST00000367257 TAF7Q15545 349 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-209ENST00000367257 RNF187Q5TA31 235 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-209ENST00000367257 URI1O94763 535 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-209ENST00000367257 TMEM132EQ6IEE7 984 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 CEP112Q8N8E3 955 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 CUL5Q93034 780 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 LRRC45Q96CN5 670 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 C1orf115Q9H7X2 142 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 CABP1Q9NZU7 370 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 OPA1O60313 960 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 PPP1R2P41236 205 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 CALML4Q96GE6 196 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 LRP2BPQ9P2M1 347 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 SLC5A1P13866 664 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 SNW1Q13573 536 aaKnown RBP10.23□□□□□ -0.77
SYNE1-209ENST00000367257 NBPF8Q3BBV2 869 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 TTC14Q96N46 770 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 ZHX3Q9H4I2 956 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 SWAP70Q9UH65 585 aa10.23□□□□□ -0.77
SYNE1-209ENST00000367257 LDHCP07864 332 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 ESCO1Q5FWF5 840 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 CNNM3Q8NE01 707 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 PIK3R4Q99570 1358 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 SLC12A5Q9H2X9 1139 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 RAI14Q9P0K7 980 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 CEP128Q6ZU80 1094 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 KCNG4Q8TDN1 519 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 RBM42Q9BTD8 480 aaKnown RBP10.22□□□□□ -0.77
SYNE1-209ENST00000367257 CYLC1P35663 651 aaPredicted RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms