RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 PPP1R42Q7Z4L9 355 aa17.83■□□□□ 0.44
TNFRSF1A-202ENST00000366159 WDR90Q96KV7 1748 aa17.83■□□□□ 0.44
TNFRSF1A-202ENST00000366159 CHPF2Q9P2E5 772 aa17.83■□□□□ 0.44
TNFRSF1A-202ENST00000366159 ANKRD36CQ5JPF3 1778 aa17.83■□□□□ 0.44
TNFRSF1A-202ENST00000366159 C3orf67Q6ZVT6 689 aa17.82■□□□□ 0.44
TNFRSF1A-202ENST00000366159 IFT57Q9NWB7 429 aa17.82■□□□□ 0.44
TNFRSF1A-202ENST00000366159 ZNF316A6NFI3 1004 aaPredicted RBP17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 VEGFAP15692 232 aaPredicted RBP17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 FKBP4Q02790 459 aaKnown RBP eCLIP17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 AIMP1Q12904 312 aaKnown RBP17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 TCIRG1Q13488 830 aa17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 HDGFL1Q5TGJ6 251 aa17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 DUSP27Q5VZP5 1158 aa17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 RNF123Q5XPI4 1314 aa17.81■□□□□ 0.44
TNFRSF1A-202ENST00000366159 FSTL1Q12841 308 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 HSP90AB3PQ58FF7 597 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 DPY19L2Q6NUT2 758 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 NLRP10Q86W26 655 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 RTKN2Q8IZC4 609 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 CRAMP1Q96RY5 1269 aa17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 UTP14AQ9BVJ6 771 aaKnown RBP17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 DBF4Q9UBU7 674 aaPredicted RBP17.8■□□□□ 0.44
TNFRSF1A-202ENST00000366159 APLP1P51693 650 aa17.79■□□□□ 0.44
TNFRSF1A-202ENST00000366159 GNAI1P63096 354 aa17.79■□□□□ 0.44
TNFRSF1A-202ENST00000366159 C16orf71Q8IYS4 520 aaPredicted RBP17.79■□□□□ 0.44
TNFRSF1A-202ENST00000366159 CALD1Q05682 793 aaKnown RBP17.78■□□□□ 0.44
TNFRSF1A-202ENST00000366159 PLBD2Q8NHP8 589 aa17.78■□□□□ 0.44
TNFRSF1A-202ENST00000366159 PSMD1Q99460 953 aa17.78■□□□□ 0.44
TNFRSF1A-202ENST00000366159 KCNA4P22459 653 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 CCDC27Q2M243 656 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 CC2D2BQ6DHV5 1058 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 ANKRD13DQ6ZTN6 518 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 DNAJC5GQ8N7S2 189 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 RPGRQ92834 1020 aaKnown RBP17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 NLRP3Q96P20 1036 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 ZNF277Q9NRM2 450 aaPredicted RBP17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 HYPKQ9NX55 129 aa17.77■□□□□ 0.44
TNFRSF1A-202ENST00000366159 LAMB2P55268 1798 aa17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 DDNO94850 711 aaPredicted RBP17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 NCBP3Q53F19 620 aaKnown RBP17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 SLC51AQ86UW1 340 aa17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 SYNE4Q8N205 404 aa17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 RBM17Q96I25 401 aaKnown RBP17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ISCA1Q9BUE6 129 aa17.76■□□□□ 0.43
TNFRSF1A-202ENST00000366159 GRIPAP1Q4V328 841 aa17.75■□□□□ 0.43
TNFRSF1A-202ENST00000366159 C8orf58Q8NAV2 365 aa17.75■□□□□ 0.43
TNFRSF1A-202ENST00000366159 SMC1BQ8NDV3 1235 aa17.75■□□□□ 0.43
TNFRSF1A-202ENST00000366159 FZD9O00144 591 aa17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 IARSP41252 1262 aaKnown RBP17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 TRIM28Q13263 835 aaKnown RBP17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 L3MBTL3Q96JM7 780 aaPredicted RBP17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 TRMT112Q9UI30 125 aaKnown RBP17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 COL4A5P29400 1685 aa17.74■□□□□ 0.43
TNFRSF1A-202ENST00000366159 HCLS1P14317 486 aaPredicted RBP17.73■□□□□ 0.43
TNFRSF1A-202ENST00000366159 WWC1Q8IX03 1113 aa17.73■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ABCC4O15439 1325 aa17.73■□□□□ 0.43
TNFRSF1A-202ENST00000366159 SH3TC1Q8TE82 1336 aa17.73■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ELL2O00472 640 aaPredicted RBP17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 PPEF1O14829 653 aaPredicted RBP17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 PHAXQ9H814 394 aaKnown RBP17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 DDX60Q8IY21 1712 aaKnown RBP17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ZNF541Q9H0D2 1346 aa17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ANP32CO43423 234 aa17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 TSPYL6Q8N831 410 aa17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 ATP6V0A2Q9Y487 856 aa17.72■□□□□ 0.43
TNFRSF1A-202ENST00000366159 SCN4AP35499 1836 aa17.71■□□□□ 0.43
TNFRSF1A-202ENST00000366159 BBOX1O75936 387 aa17.71■□□□□ 0.42
TNFRSF1A-202ENST00000366159 MRS2Q9HD23 443 aa17.71■□□□□ 0.42
TNFRSF1A-202ENST00000366159 ATP5J2-PTCD1G3V325 749 aa17.7■□□□□ 0.42
TNFRSF1A-202ENST00000366159 TSR2Q969E8 191 aaKnown RBP17.7■□□□□ 0.42
TNFRSF1A-202ENST00000366159 IL16Q14005 1332 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 POTEIP0CG38 1075 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 POTEJP0CG39 1038 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 HTRA3P83110 453 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 SF3B3Q15393 1217 aaKnown RBP17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 SP8Q8IXZ3 490 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 FAM89AQ96GI7 184 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 RTFDC1Q9BY42 306 aaPredicted RBP17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 VPS33BQ9H267 617 aa17.69■□□□□ 0.42
TNFRSF1A-202ENST00000366159 TAF1P21675 1872 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 IQCA1LA6NCM1 817 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 TCERG1O14776 1098 aaKnown RBP17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 GRAPQ13588 217 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 CCDC30Q5VVM6 783 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 GPC2Q8N158 579 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 GRAPLQ8TC17 118 aaPredicted RBP17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 ZNF428Q96B54 188 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 CHMP4AQ9BY43 222 aa17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 TAF1DQ9H5J8 278 aaPredicted RBP17.68■□□□□ 0.42
TNFRSF1A-202ENST00000366159 DDX46Q7L014 1031 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-202ENST00000366159 RIC3Q7Z5B4 369 aa17.67■□□□□ 0.42
TNFRSF1A-202ENST00000366159 ADAMTSL1Q8N6G6 1762 aa17.67■□□□□ 0.42
TNFRSF1A-202ENST00000366159 JDP2Q8WYK2 163 aa17.67■□□□□ 0.42
TNFRSF1A-202ENST00000366159 PCNTO95613 3336 aa17.66■□□□□ 0.42
TNFRSF1A-202ENST00000366159 COL4A1P02462 1669 aa17.66■□□□□ 0.42
TNFRSF1A-202ENST00000366159 GOLGA2Q08379 1002 aa17.66■□□□□ 0.42
TNFRSF1A-202ENST00000366159 CHADLQ6NUI6 762 aa17.66■□□□□ 0.42
TNFRSF1A-202ENST00000366159 LRRC37AA6NMS7 1700 aa17.65■□□□□ 0.42
TNFRSF1A-202ENST00000366159 ZBTB38Q8NAP3 1195 aaPredicted RBP17.65■□□□□ 0.42
TNFRSF1A-202ENST00000366159 KLRG1Q96E93 195 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms