RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SNX21Q969T3 373 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 CLIP2Q9UDT6 1046 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 TRMT112Q9UI30 125 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 ZPR1O75312 459 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 UQCRFS1P1P0C7P4 283 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 CALRP27797 417 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 MTHFSDQ2M296 383 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 ANKRD44Q8N8A2 993 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 CAMK4Q16566 473 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 NEK1Q96PY6 1258 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 ATP5J2-PTCD1G3V325 749 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 IFIT3O14879 490 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 SNRPA1P09661 255 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 PPP1R42Q7Z4L9 355 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 DZIP1Q86YF9 867 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 ZNF444Q8N0Y2 327 aaPredicted RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 KLHL34Q8N239 644 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 CDC5LQ99459 802 aaKnown RBP13.6□□□□□ -0.23
COL9A1-202ENST00000357250 PIK3C2GO75747 1445 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 USO1O60763 962 aaKnown RBP13.59□□□□□ -0.23
COL9A1-202ENST00000357250 AMPD3Q01432 767 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 FSIP1Q8NA03 581 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 CNNM3Q8NE01 707 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 CCDC194A0A1B0GVG4 234 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 MINDY4BA8MYZ0 360 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 CGNQ9P2M7 1197 aaKnown RBP13.59□□□□□ -0.23
COL9A1-202ENST00000357250 MAP3K2Q9Y2U5 619 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 NPATQ14207 1427 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 IARSP41252 1262 aaKnown RBP13.59□□□□□ -0.23
COL9A1-202ENST00000357250 ZBTB3Q9H5J0 574 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 YEATS4O95619 227 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 TRIM21P19474 475 aaKnown RBP13.59□□□□□ -0.23
COL9A1-202ENST00000357250 GJB2P29033 226 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 NCOA7Q8NI08 942 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 RHPN1Q8TCX5 695 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 LRRC27Q9C0I9 530 aa13.59□□□□□ -0.23
COL9A1-202ENST00000357250 EZRP15311 586 aaKnown RBP13.58□□□□□ -0.24
COL9A1-202ENST00000357250 CCDC178Q5BJE1 867 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 BCL11BQ9C0K0 894 aaPredicted RBP13.58□□□□□ -0.24
COL9A1-202ENST00000357250 UGGT1Q9NYU2 1555 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 EHMT1Q9H9B1 1298 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 MAP3K19Q56UN5 1328 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 MAST1Q9Y2H9 1570 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 EYA1Q99502 592 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 LARP6Q9BRS8 491 aaKnown RBP13.58□□□□□ -0.24
COL9A1-202ENST00000357250 ABCA8O94911 1581 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 SPTY2D1Q68D10 685 aaPredicted RBP13.58□□□□□ -0.24
COL9A1-202ENST00000357250 TMTC2Q8N394 836 aa13.58□□□□□ -0.24
COL9A1-202ENST00000357250 FAM114A1Q8IWE2 563 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 CCDC150Q8NCX0 1101 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 CCDC102AQ96A19 550 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 SPATA31E1Q6ZUB1 1445 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 TUBB4AP04350 444 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 CASQ1P31415 396 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 CACNA2D4Q7Z3S7 1137 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 MPNDQ8N594 471 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 ORAI2Q96SN7 254 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 USP16Q9Y5T5 823 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 ZFYVE9O95405 1425 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 LTKP29376 864 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 PAFAH1B1P43034 410 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 KIF4BQ2VIQ3 1234 aa13.57□□□□□ -0.24
COL9A1-202ENST00000357250 PRIMPOLQ96LW4 560 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 ZNF165P49910 485 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 CRACR2BQ8N4Y2 399 aaPredicted RBP13.56□□□□□ -0.24
COL9A1-202ENST00000357250 TCP11L1Q9NUJ3 509 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 RANBP6O60518 1105 aaKnown RBP13.56□□□□□ -0.24
COL9A1-202ENST00000357250 PPP4R3BQ5MIZ7 849 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 CCDC102BQ68D86 513 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 LDHAL6AQ6ZMR3 332 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 ORC3Q9UBD5 711 aaPredicted RBP13.56□□□□□ -0.24
COL9A1-202ENST00000357250 ZSCAN22P10073 491 aaPredicted RBP13.56□□□□□ -0.24
COL9A1-202ENST00000357250 GPTP24298 496 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 NLRP5P59047 1200 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 PDE4BQ07343 736 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 DDX17Q92841 729 aaKnown RBP13.56□□□□□ -0.24
COL9A1-202ENST00000357250 USP25Q9UHP3 1055 aa13.56□□□□□ -0.24
COL9A1-202ENST00000357250 GBP2P32456 591 aaPredicted RBP13.55□□□□□ -0.24
COL9A1-202ENST00000357250 ATP8B2P98198 1209 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 CADPS2Q86UW7 1296 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 CUL5Q93034 780 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 SEPT11Q9NVA2 429 aaKnown RBP13.55□□□□□ -0.24
COL9A1-202ENST00000357250 CHPF2Q9P2E5 772 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 EXOC5O00471 708 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 MPHOSPH10O00566 681 aaKnown RBP13.55□□□□□ -0.24
COL9A1-202ENST00000357250 BAG3O95817 575 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 PDE1AP54750 535 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
COL9A1-202ENST00000357250 ABCC1P33527 1531 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 SAMD9LQ8IVG5 1584 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 TTC37Q6PGP7 1564 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 TNNT1P13805 278 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 TRAF1Q13077 416 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 ANKRD13DQ6ZTN6 518 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 TTC41PQ6P2S7 1318 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 VAMP4O75379 141 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 URI1O94763 535 aaPredicted RBP13.55□□□□□ -0.24
COL9A1-202ENST00000357250 LRSAM1Q6UWE0 723 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 TMX3Q96JJ7 454 aa13.55□□□□□ -0.24
COL9A1-202ENST00000357250 GOLIM4O00461 696 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms