RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 NEBLO76041 1014 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 METAP2P50579 478 aaKnown RBP eCLIP17.06■□□□□ 0.324e-8■■■□□ 14.6
CHD4-201ENST00000357008 ISM2Q6H9L7 571 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 HOOK3Q86VS8 718 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 ANKLE2Q86XL3 938 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 SRRTQ9BXP5 876 aaKnown RBP17.06■□□□□ 0.32
CHD4-201ENST00000357008 ZNF652Q9Y2D9 606 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 CAMSAP2Q08AD1 1489 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 CCDC40Q4G0X9 1142 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 TSHZ3Q63HK5 1081 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 PIK3R4Q99570 1358 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 TICAM2Q86XR7 235 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 KCNG4Q8TDN1 519 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 IVLP07476 585 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTNNBL1Q8WYA6 563 aaPredicted RBP17.05■□□□□ 0.32
CHD4-201ENST00000357008 DNAI1Q9UI46 699 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 UBA7P41226 1012 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.05■□□□□ 0.328e-10■■■■□ 22.5
CHD4-201ENST00000357008 TTC21BQ7Z4L5 1316 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CETN1Q12798 172 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 RHPN1Q8TCX5 695 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTAGE1Q96RT6 745 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 IFT140Q96RY7 1462 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 ESYT1Q9BSJ8 1104 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 ANKRD18BA2A2Z9 1011 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTAGE15A4D2H0 777 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTAGE8P0CG41 777 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTAGE6Q86UF2 777 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CTAGE4Q8IX94 777 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 CEP112Q8N8E3 955 aa17.05■□□□□ 0.32
CHD4-201ENST00000357008 HSF2BPO75031 334 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 DZIP1Q86YF9 867 aaKnown RBP17.04■□□□□ 0.32
CHD4-201ENST00000357008 PCF11O94913 1555 aaKnown RBP17.04■□□□□ 0.32
CHD4-201ENST00000357008 RAPGEF3O95398 923 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 MAP3K2Q9Y2U5 619 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 SLU7O95391 586 aaKnown RBP17.04■□□□□ 0.32
CHD4-201ENST00000357008 PDE1AP54750 535 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 BRF1Q92994 677 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 TOPBP1Q92547 1522 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 MICU3Q86XE3 530 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 NECAB1Q8N987 351 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 MRPS27Q92552 414 aaKnown RBP17.04■□□□□ 0.32
CHD4-201ENST00000357008 RMND1Q9NWS8 449 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 KIF5BP33176 963 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 MPRIPQ6WCQ1 1025 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 BICDL1Q6ZP65 573 aa17.04■□□□□ 0.32
CHD4-201ENST00000357008 IDEP14735 1019 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 NOP2P46087 812 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 RAB3GAP1Q15042 981 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 DACT1Q9NYF0 836 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 F13A1P00488 732 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 TRIM21P19474 475 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 PRIM1P49642 420 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 SMC5Q8IY18 1101 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 TMOD2Q9NZR1 351 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 ADGRF5Q8IZF2 1346 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 UBE4AQ14139 1066 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 TMOD3Q9NYL9 352 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 LIG1P18858 919 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 USHBP1Q8N6Y0 703 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 AKR1B10O60218 316 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 RBM25P49756 843 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 SPAG1Q07617 926 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 IFI16Q16666 785 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 ANKRD44Q8N8A2 993 aa17.03■□□□□ 0.32
CHD4-201ENST00000357008 IPO4Q8TEX9 1081 aaKnown RBP17.03■□□□□ 0.32
CHD4-201ENST00000357008 MNAT1P51948 309 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 SLC26A6Q9BXS9 759 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 DISP3Q9P2K9 1392 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 TTC12Q9H892 705 aaPredicted RBP17.02■□□□□ 0.32
CHD4-201ENST00000357008 CYLC1P35663 651 aaPredicted RBP17.02■□□□□ 0.32
CHD4-201ENST00000357008 STAMBPO95630 424 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 BMP15O95972 392 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 CRACR2BQ8N4Y2 399 aaPredicted RBP17.02■□□□□ 0.32
CHD4-201ENST00000357008 LRRC27Q9C0I9 530 aa17.02■□□□□ 0.32
CHD4-201ENST00000357008 MACROD2A1Z1Q3 448 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 WASLO00401 505 aaPredicted RBP17.02■□□□□ 0.31
CHD4-201ENST00000357008 GPATCH11Q8N954 259 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 TRMT112Q9UI30 125 aaKnown RBP17.02■□□□□ 0.31
CHD4-201ENST00000357008 PI4KAP2A4QPH2 592 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 HAND2P61296 217 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 CCDC144CPQ8IYA2 1237 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 PI4KAP1Q8N8J0 262 aa17.02■□□□□ 0.31
CHD4-201ENST00000357008 RALGAPBQ86X10 1494 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 MFSD6Q6ZSS7 791 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 TRIM47Q96LD4 638 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 PRPF4BQ13523 1007 aaKnown RBP17.01■□□□□ 0.31
CHD4-201ENST00000357008 GTPBP4Q9BZE4 634 aaKnown RBP17.01■□□□□ 0.31
CHD4-201ENST00000357008 DNAI2Q9GZS0 605 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 TCERG1LQ5VWI1 586 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 ANKRD36BQ8N2N9 1353 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 BBXQ8WY36 941 aaPredicted RBP17.01■□□□□ 0.31
CHD4-201ENST00000357008 CUL5Q93034 780 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 DNAJC25Q9H1X3 360 aa17.01■□□□□ 0.31
CHD4-201ENST00000357008 MAGI1Q96QZ7 1491 aaPredicted RBP17.01■□□□□ 0.31
CHD4-201ENST00000357008 NF2P35240 595 aa17■□□□□ 0.31
CHD4-201ENST00000357008 CCDC96Q2M329 555 aa17■□□□□ 0.31
CHD4-201ENST00000357008 FSD2A1L4K1 749 aa17■□□□□ 0.31
CHD4-201ENST00000357008 KLF18A0A0U1RQI7 1052 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms