RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MAGEB6P1A0A0J9YX57 407 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 ITGAEP38570 1179 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 VEGFBP49765 207 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 SH3D19Q5HYK7 790 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 SLC16A10Q8TF71 515 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 LRRN4Q8WUT4 740 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 BTG4Q9NY30 223 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 STK26Q9P289 416 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 TIMELESSQ9UNS1 1208 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 ADGRF5Q8IZF2 1346 aa10.03□□□□□ -0.8
VPS13A-201ENST00000355766 TRPM3Q9HCF6 1732 aaPredicted RBP10.02□□□□□ -0.8
VPS13A-201ENST00000355766 PIK3C2GO75747 1445 aa10.02□□□□□ -0.81
VPS13A-201ENST00000355766 YTHDC2Q9H6S0 1430 aaKnown RBP10.02□□□□□ -0.81
VPS13A-201ENST00000355766 INSM1Q01101 510 aaPredicted RBP10.02□□□□□ -0.81
VPS13A-201ENST00000355766 TRMT44Q8IYL2 757 aaKnown RBP10.02□□□□□ -0.81
VPS13A-201ENST00000355766 ANKARQ7Z5J8 1434 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 FSHRP23945 695 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 VASH1Q7L8A9 365 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-201ENST00000355766 NPAS3Q8IXF0 933 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS13A-201ENST00000355766 CARD14Q9BXL6 1004 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 MAP4K5Q9Y4K4 846 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 ALS2Q96Q42 1657 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 CRYBG1Q9Y4K1 1723 aa10.01□□□□□ -0.81
VPS13A-201ENST00000355766 SOBPA7XYQ1 873 aa10□□□□□ -0.81
VPS13A-201ENST00000355766 TRIM37O94972 964 aa10□□□□□ -0.81
VPS13A-201ENST00000355766 GPKOWQ92917 476 aaPredicted RBP eCLIP10□□□□□ -0.81
VPS13A-201ENST00000355766 DDRGK1Q96HY6 314 aa10□□□□□ -0.81
VPS13A-201ENST00000355766 PPP1R1BQ9UD71 204 aaPredicted RBP10□□□□□ -0.81
VPS13A-201ENST00000355766 ANKRD30BQ9BXX2 1392 aa10□□□□□ -0.81
VPS13A-201ENST00000355766 H3BM21 787 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 APBA3O96018 575 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 C6orf118Q5T5N4 469 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 PPP2R2DQ66LE6 453 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 FAM196AQ6ZSG2 479 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 SPON1Q9HCB6 807 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 CAMTA1Q9Y6Y1 1673 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 SPATA31E1Q6ZUB1 1445 aa9.99□□□□□ -0.81
VPS13A-201ENST00000355766 GMPRP36959 345 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 NBPF8Q3BBV2 869 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 ERFEQ4G0M1 354 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 TMEM132EQ6IEE7 984 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 SIRT1Q96EB6 747 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 STK17AQ9UEE5 414 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 SPATA31A1Q5TZJ5 1347 aa9.98□□□□□ -0.81
VPS13A-201ENST00000355766 RGPD8O14715 1765 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-201ENST00000355766 NRKQ7Z2Y5 1582 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 KCNQ2O43526 872 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 NR6A1Q15406 480 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 PDXDC2PQ6P474 469 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 MEIOBQ8N635 442 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 IRF7Q92985 503 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 FKBPLQ9UIM3 349 aa9.97□□□□□ -0.81
VPS13A-201ENST00000355766 SENP3-EIF4A1A0A087X0R7 540 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 ZNF784Q8NCA9 323 aaPredicted RBP9.96□□□□□ -0.82
VPS13A-201ENST00000355766 PMFBP1Q8TBY8 1022 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 ARHGAP9Q9BRR9 750 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 PRDM11Q9NQV5 511 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 ERBB4Q15303 1308 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 DLC1Q96QB1 1528 aa9.96□□□□□ -0.82
VPS13A-201ENST00000355766 AP1G2O75843 785 aa9.95□□□□□ -0.82
VPS13A-201ENST00000355766 BMP2P12643 396 aa9.95□□□□□ -0.82
VPS13A-201ENST00000355766 CCDC116Q8IYX3 515 aa9.95□□□□□ -0.82
VPS13A-201ENST00000355766 LINC00528Q8N1L1 170 aa9.95□□□□□ -0.82
VPS13A-201ENST00000355766 GPRASP1Q5JY77 1395 aa9.95□□□□□ -0.82
VPS13A-201ENST00000355766 PHRF1Q9P1Y6 1649 aaKnown RBP9.95□□□□□ -0.82
VPS13A-201ENST00000355766 RGPD3A6NKT7 1758 aaPredicted RBP9.94□□□□□ -0.82
VPS13A-201ENST00000355766 RGPD4Q7Z3J3 1758 aa9.94□□□□□ -0.82
VPS13A-201ENST00000355766 CASZ1Q86V15 1759 aa9.94□□□□□ -0.82
VPS13A-201ENST00000355766 TULP4Q9NRJ4 1543 aa9.94□□□□□ -0.82
VPS13A-201ENST00000355766 EIF3AQ14152 1382 aaKnown RBP9.94□□□□□ -0.82
VPS13A-201ENST00000355766 EMILIN1Q9Y6C2 1016 aa9.94□□□□□ -0.82
VPS13A-201ENST00000355766 SSH2Q76I76 1423 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 KIAA0232Q92628 1395 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 MAN1A2O60476 641 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 UPP2O95045 317 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 PRAM1Q96QH2 718 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 MYOM1P52179 1685 aa9.93□□□□□ -0.82
VPS13A-201ENST00000355766 ATP7BP35670 1465 aa9.92□□□□□ -0.82
VPS13A-201ENST00000355766 PDE3BQ13370 1112 aa9.92□□□□□ -0.82
VPS13A-201ENST00000355766 SAFB2Q14151 953 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS13A-201ENST00000355766 RGL3Q3MIN7 710 aa9.92□□□□□ -0.82
VPS13A-201ENST00000355766 PPP1R26Q5T8A7 1209 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-201ENST00000355766 EPS8L1Q8TE68 723 aa9.92□□□□□ -0.82
VPS13A-201ENST00000355766 OCSTAMPQ9BR26 566 aa9.92□□□□□ -0.82
VPS13A-201ENST00000355766 PRR36Q9H6K5 1346 aa9.91□□□□□ -0.82
VPS13A-201ENST00000355766 ZC3H4Q9UPT8 1303 aaKnown RBP9.91□□□□□ -0.82
VPS13A-201ENST00000355766 C1QTNF8P60827 252 aa9.91□□□□□ -0.82
VPS13A-201ENST00000355766 ZBTB33Q86T24 672 aa9.91□□□□□ -0.82
VPS13A-201ENST00000355766 C14orf93Q9H972 538 aaKnown RBP9.91□□□□□ -0.82
VPS13A-201ENST00000355766 STRN4Q9NRL3 753 aa9.91□□□□□ -0.82
VPS13A-201ENST00000355766 UTRNP46939 3433 aa9.9□□□□□ -0.82
VPS13A-201ENST00000355766 LORP23490 312 aaPredicted RBP9.9□□□□□ -0.82
VPS13A-201ENST00000355766 CHRNA2Q15822 529 aa9.9□□□□□ -0.82
VPS13A-201ENST00000355766 SLC10A4Q96EP9 437 aa9.9□□□□□ -0.82
VPS13A-201ENST00000355766 KCTD15Q96SI1 283 aaPredicted RBP9.9□□□□□ -0.82
VPS13A-201ENST00000355766 TSEN34Q9BSV6 310 aaKnown RBP9.9□□□□□ -0.82
VPS13A-201ENST00000355766 HMX1Q9NP08 348 aaPredicted RBP9.9□□□□□ -0.82
VPS13A-201ENST00000355766 PARP4Q9UKK3 1724 aaKnown RBP9.9□□□□□ -0.83
VPS13A-201ENST00000355766 OVOS2A0A0G2JMS6 1433 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms