RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PLEKHG2Q9H7P9 1386 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 PNMA6EA0A0J9YXQ4 647 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 GNAI2P04899 355 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 TAF7LQ5H9L4 462 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 LMBR1LQ6UX01 489 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 NLRP10Q86W26 655 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 PPP4R2Q9NY27 417 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 NFIXQ14938 502 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 BCL2L12Q9HB09 334 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 ADAMTS7Q9UKP4 1686 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 ERFEQ4G0M1 354 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 INTS3Q68E01 1043 aaKnown RBP11.51□□□□□ -0.57
USP4-202ENST00000351842 NARFQ9UHQ1 456 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 CNTNAP4Q9C0A0 1308 aa11.51□□□□□ -0.57
USP4-202ENST00000351842 IRS4O14654 1257 aaPredicted RBP11.5□□□□□ -0.57
USP4-202ENST00000351842 GYS1P13807 737 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 PPP1R42Q7Z4L9 355 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 ZBTB40Q9NUA8 1239 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 NHSQ6T4R5 1651 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 SMARCA5O60264 1052 aaPredicted RBP11.5□□□□□ -0.57
USP4-202ENST00000351842 SLC51AQ86UW1 340 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 IL1RAPL2Q9NP60 686 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 PNPLA7Q6ZV29 1317 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 ERBB4Q15303 1308 aa11.5□□□□□ -0.57
USP4-202ENST00000351842 SURF6O75683 361 aaKnown RBP11.49□□□□□ -0.57
USP4-202ENST00000351842 GNAI3P08754 354 aa11.49□□□□□ -0.57
USP4-202ENST00000351842 FAM161AQ3B820 660 aa11.49□□□□□ -0.57
USP4-202ENST00000351842 UTP14AQ9BVJ6 771 aaKnown RBP11.49□□□□□ -0.57
USP4-202ENST00000351842 USP42Q9H9J4 1324 aaKnown RBP11.49□□□□□ -0.57
USP4-202ENST00000351842 LNPKQ9C0E8 428 aa11.49□□□□□ -0.57
USP4-202ENST00000351842 ZBTB47Q9UFB7 747 aaPredicted RBP11.49□□□□□ -0.57
USP4-202ENST00000351842 ANKRD45Q5TZF3 282 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 CNBD1Q8NA66 436 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 HELBQ8NG08 1087 aaPredicted RBP11.48□□□□□ -0.57
USP4-202ENST00000351842 RC3H1Q5TC82 1133 aaKnown RBP11.48□□□□□ -0.57
USP4-202ENST00000351842 ERICH6BQ5W0A0 696 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 C3orf67Q6ZVT6 689 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 AKT1S1Q96B36 256 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 SEC31BQ9NQW1 1179 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 BRPF1P55201 1214 aaPredicted RBP11.48□□□□□ -0.57
USP4-202ENST00000351842 HSP90AB3PQ58FF7 597 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 TSHZ3Q63HK5 1081 aa11.48□□□□□ -0.57
USP4-202ENST00000351842 SERPINB2P05120 415 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 SSFA2P28290 1259 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 SIRT2Q8IXJ6 389 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 CCDC191Q8NCU4 936 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 SH3TC1Q8TE82 1336 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 SNAP23O00161 211 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 CEP85Q6P2H3 762 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 UBR2Q8IWV8 1755 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 DDR1Q08345 913 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 TPTE2Q6XPS3 522 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 GREM2Q9H772 168 aa11.47□□□□□ -0.57
USP4-202ENST00000351842 ALDH1L1O75891 902 aa11.46□□□□□ -0.57
USP4-202ENST00000351842 ZNF622Q969S3 477 aaKnown RBP eCLIP11.46□□□□□ -0.572e-6■■□□□ 13.5
USP4-202ENST00000351842 KAZALD1Q96I82 304 aa11.46□□□□□ -0.57
USP4-202ENST00000351842 ISCA1Q9BUE6 129 aa11.46□□□□□ -0.57
USP4-202ENST00000351842 TJP1Q07157 1748 aa11.46□□□□□ -0.57
USP4-202ENST00000351842 CCDC57Q2TAC2 916 aa11.46□□□□□ -0.58
USP4-202ENST00000351842 PARP3Q9Y6F1 533 aa11.46□□□□□ -0.58
USP4-202ENST00000351842 ERVV-1B6SEH8 477 aa11.45□□□□□ -0.58
USP4-202ENST00000351842 ZNF34Q8IZ26 560 aa11.45□□□□□ -0.58
USP4-202ENST00000351842 ZBTB38Q8NAP3 1195 aaPredicted RBP11.45□□□□□ -0.58
USP4-202ENST00000351842 RWDD1Q9H446 243 aaPredicted RBP11.45□□□□□ -0.58
USP4-202ENST00000351842 C4BP0C0L5 1744 aa11.45□□□□□ -0.58
USP4-202ENST00000351842 PUS3Q9BZE2 481 aaKnown RBP11.45□□□□□ -0.58
USP4-202ENST00000351842 CHRNA5P30532 468 aa11.44□□□□□ -0.58
USP4-202ENST00000351842 C16orf71Q8IYS4 520 aaPredicted RBP11.44□□□□□ -0.58
USP4-202ENST00000351842 CNNM1Q9NRU3 951 aa11.44□□□□□ -0.58
USP4-202ENST00000351842 PAPPAQ13219 1627 aa11.44□□□□□ -0.58
USP4-202ENST00000351842 OLFM4Q6UX06 510 aa11.44□□□□□ -0.58
USP4-202ENST00000351842 ABCC12Q96J65 1359 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 ITGA6P23229 1130 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 IFIT5Q13325 482 aaKnown RBP11.43□□□□□ -0.58
USP4-202ENST00000351842 PRR5LQ6MZQ0 368 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 NLGN1Q8N2Q7 840 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 NTSR2O95665 410 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 LRRC24Q50LG9 513 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 NEUROD6Q96NK8 337 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 NLRP3Q96P20 1036 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 HMMRO75330 724 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 TAF5LO75529 589 aa11.43□□□□□ -0.58
USP4-202ENST00000351842 OTUD7AQ8TE49 926 aaPredicted RBP11.43□□□□□ -0.58
USP4-202ENST00000351842 CARMIL3Q8ND23 1372 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 WTIPA6NIX2 430 aaPredicted RBP11.42□□□□□ -0.58
USP4-202ENST00000351842 H7C1W4 665 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 PCCAP05165 728 aaPredicted RBP11.42□□□□□ -0.58
USP4-202ENST00000351842 LDHAL6AQ6ZMR3 332 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 CCDC125Q86Z20 511 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 MPHOSPH8Q99549 860 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 CHMP4BQ9H444 224 aaKnown RBP11.42□□□□□ -0.58
USP4-202ENST00000351842 ADRA2BP18089 450 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 ST5P78524 1137 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 G3BP1Q13283 466 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP4-202ENST00000351842 PARP10Q53GL7 1025 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 CLEC4GQ6UXB4 293 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 ANKRD44Q8N8A2 993 aa11.42□□□□□ -0.58
USP4-202ENST00000351842 RPGRQ92834 1020 aaKnown RBP11.42□□□□□ -0.58
USP4-202ENST00000351842 CTSWP56202 376 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 GPR101Q96P66 508 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms