RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 PTPN12Q05209 780 aaKnown RBP20.25■□□□□ 0.83
SAMM50-201ENST00000350028 KIAA1211Q6ZU35 1233 aa20.25■□□□□ 0.83
SAMM50-201ENST00000350028 CCDC191Q8NCU4 936 aa20.25■□□□□ 0.83
SAMM50-201ENST00000350028 HIP1O00291 1037 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 JARID2Q92833 1246 aaPredicted RBP20.24■□□□□ 0.83
SAMM50-201ENST00000350028 CCDC8Q9H0W5 538 aaPredicted RBP20.24■□□□□ 0.83
SAMM50-201ENST00000350028 IL25Q9H293 177 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 PALD1Q9ULE6 856 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 RAD50Q92878 1312 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 PLCH1Q4KWH8 1693 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 PTMSP20962 102 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 KLHDC4Q8TBB5 520 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 PIGBQ92521 554 aa20.24■□□□□ 0.83
SAMM50-201ENST00000350028 LSG1Q9H089 658 aaKnown RBP20.24■□□□□ 0.83
SAMM50-201ENST00000350028 NUCB2P80303 420 aa20.23■□□□□ 0.83
SAMM50-201ENST00000350028 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.23■□□□□ 0.83
SAMM50-201ENST00000350028 FOXO4P98177 505 aa20.22■□□□□ 0.83
SAMM50-201ENST00000350028 ITGB4P16144 1822 aa20.22■□□□□ 0.83
SAMM50-201ENST00000350028 LMBR1LQ6UX01 489 aa20.22■□□□□ 0.83
SAMM50-201ENST00000350028 CWC27Q6UX04 472 aaKnown RBP20.22■□□□□ 0.83
SAMM50-201ENST00000350028 ZBTB3Q9H5J0 574 aa20.22■□□□□ 0.83
SAMM50-201ENST00000350028 ATG3Q9NT62 314 aa20.22■□□□□ 0.83
SAMM50-201ENST00000350028 EXOC5O00471 708 aa20.21■□□□□ 0.83
SAMM50-201ENST00000350028 CLEC17AQ6ZS10 378 aa20.21■□□□□ 0.83
SAMM50-201ENST00000350028 ASAP1Q9ULH1 1129 aa20.21■□□□□ 0.83
SAMM50-201ENST00000350028 TJP1Q07157 1748 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 NRAPQ86VF7 1730 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 STARD3NLO95772 234 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 TNNI3KQ59H18 835 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 ISCA1Q9BUE6 129 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 FPGT-TNNI3KV9GXZ4 949 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 SPATA31A6Q5VVP1 1343 aa20.2■□□□□ 0.82
SAMM50-201ENST00000350028 TRAK2O60296 914 aa20.19■□□□□ 0.82
SAMM50-201ENST00000350028 DNAJC10Q8IXB1 793 aa20.19■□□□□ 0.82
SAMM50-201ENST00000350028 TLR7Q9NYK1 1049 aaKnown RBP20.19■□□□□ 0.82
SAMM50-201ENST00000350028 TFCP2Q12800 502 aa20.19■□□□□ 0.82
SAMM50-201ENST00000350028 TRIM28Q13263 835 aaKnown RBP20.19■□□□□ 0.82
SAMM50-201ENST00000350028 TCIRG1Q13488 830 aa20.19■□□□□ 0.82
SAMM50-201ENST00000350028 TMX3Q96JJ7 454 aa20.19■□□□□ 0.82
SAMM50-201ENST00000350028 CDCA7Q9BWT1 371 aaPredicted RBP20.19■□□□□ 0.82
SAMM50-201ENST00000350028 BCL9O00512 1426 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 WNK3Q9BYP7 1800 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 ATP5JP18859 108 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 SSFA2P28290 1259 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 CUL4AQ13619 759 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 BOLA2Q9H3K6 86 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 SLIT2O94813 1529 aa20.18■□□□□ 0.82
SAMM50-201ENST00000350028 KIF6Q6ZMV9 814 aa20.17■□□□□ 0.82
SAMM50-201ENST00000350028 SNRKQ9NRH2 765 aa20.17■□□□□ 0.82
SAMM50-201ENST00000350028 SNX14Q9Y5W7 946 aa20.17■□□□□ 0.82
SAMM50-201ENST00000350028 CYP2E1P05181 493 aaPredicted RBP20.16■□□□□ 0.82
SAMM50-201ENST00000350028 GPR108Q9NPR9 543 aa20.16■□□□□ 0.82
SAMM50-201ENST00000350028 SKOR2Q2VWA4 1001 aaPredicted RBP20.16■□□□□ 0.82
SAMM50-201ENST00000350028 INTS4Q96HW7 963 aaKnown RBP20.16■□□□□ 0.82
SAMM50-201ENST00000350028 CHMP3Q9Y3E7 222 aa20.16■□□□□ 0.82
SAMM50-201ENST00000350028 NWD2Q9ULI1 1742 aa20.15■□□□□ 0.82
SAMM50-201ENST00000350028 GOLGA6L22H0YM25 854 aa20.15■□□□□ 0.82
SAMM50-201ENST00000350028 ZGPATQ8N5A5 531 aaKnown RBP20.15■□□□□ 0.82
SAMM50-201ENST00000350028 KCNB2Q92953 911 aa20.15■□□□□ 0.82
SAMM50-201ENST00000350028 DBNLQ9UJU6 430 aaKnown RBP20.15■□□□□ 0.82
SAMM50-201ENST00000350028 THRAP3Q9Y2W1 955 aaKnown RBP20.15■□□□□ 0.82
SAMM50-201ENST00000350028 IL15P40933 162 aaPredicted RBP20.14■□□□□ 0.81
SAMM50-201ENST00000350028 FBXO41Q8TF61 875 aa20.14■□□□□ 0.81
SAMM50-201ENST00000350028 FSD1Q9BTV5 496 aa20.14■□□□□ 0.81
SAMM50-201ENST00000350028 NMIQ13287 307 aaPredicted RBP20.13■□□□□ 0.81
SAMM50-201ENST00000350028 C8orf37Q96NL8 207 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 UPF3BQ9BZI7 483 aaKnown RBP20.13■□□□□ 0.81
SAMM50-201ENST00000350028 BCL9LQ86UU0 1499 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 RFX7Q2KHR2 1363 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 CCDC171Q6TFL3 1326 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 MAP3K15Q6ZN16 1313 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 CIAO1O76071 339 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 PCCAP05165 728 aaPredicted RBP20.13■□□□□ 0.81
SAMM50-201ENST00000350028 PTH1RQ03431 593 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 ATG9AQ7Z3C6 839 aa20.13■□□□□ 0.81
SAMM50-201ENST00000350028 EYA2O00167 538 aa20.12■□□□□ 0.81
SAMM50-201ENST00000350028 BAG4O95429 457 aaKnown RBP20.12■□□□□ 0.81
SAMM50-201ENST00000350028 CYP19A1P11511 503 aaPredicted RBP20.12■□□□□ 0.81
SAMM50-201ENST00000350028 HSP90AB3PQ58FF7 597 aa20.12■□□□□ 0.81
SAMM50-201ENST00000350028 GIGYF2Q6Y7W6 1299 aaKnown RBP20.12■□□□□ 0.81
SAMM50-201ENST00000350028 RASEFQ8IZ41 740 aa20.12■□□□□ 0.81
SAMM50-201ENST00000350028 TM6SF1Q9BZW5 370 aa20.12■□□□□ 0.81
SAMM50-201ENST00000350028 ZNF330Q9Y3S2 320 aaPredicted RBP20.12■□□□□ 0.81
SAMM50-201ENST00000350028 FAM227BQ96M60 508 aa20.11■□□□□ 0.81
SAMM50-201ENST00000350028 DBNDD2Q9BQY9 259 aa20.11■□□□□ 0.81
SAMM50-201ENST00000350028 PLA2G12BQ9BX93 195 aa20.11■□□□□ 0.81
SAMM50-201ENST00000350028 FBXO3Q9UK99 471 aa20.11■□□□□ 0.81
SAMM50-201ENST00000350028 SPATA31A1Q5TZJ5 1347 aa20.11■□□□□ 0.81
SAMM50-201ENST00000350028 NECTIN1Q15223 517 aa20.1■□□□□ 0.81
SAMM50-201ENST00000350028 MAP4K1Q92918 833 aa20.1■□□□□ 0.81
SAMM50-201ENST00000350028 TTC14Q96N46 770 aa20.1■□□□□ 0.81
SAMM50-201ENST00000350028 HAUS7Q99871 368 aa20.1■□□□□ 0.81
SAMM50-201ENST00000350028 TICAM2Q86XR7 235 aa20.1■□□□□ 0.81
SAMM50-201ENST00000350028 FNBP4Q8N3X1 1017 aaPredicted RBP20.1■□□□□ 0.81
SAMM50-201ENST00000350028 ZKSCAN1P17029 563 aaPredicted RBP20.09■□□□□ 0.81
SAMM50-201ENST00000350028 ZBTB38Q8NAP3 1195 aaPredicted RBP20.09■□□□□ 0.81
SAMM50-201ENST00000350028 NGLY1Q96IV0 654 aa20.09■□□□□ 0.81
SAMM50-201ENST00000350028 SLC4A9Q96Q91 983 aa20.09■□□□□ 0.81
SAMM50-201ENST00000350028 MED23Q9ULK4 1368 aa20.09■□□□□ 0.81
SAMM50-201ENST00000350028 PRIM1P49642 420 aaKnown RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 256.5 ms