RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PRPF40BQ6NWY9 871 aaKnown RBP18.63■□□□□ 0.57
UPF3B-202ENST00000345865 UBE3BQ7Z3V4 1068 aa18.63■□□□□ 0.57
UPF3B-202ENST00000345865 LARGE1O95461 756 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 PTPN12Q05209 780 aaKnown RBP18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NMIQ13287 307 aaPredicted RBP18.62■□□□□ 0.57
UPF3B-202ENST00000345865 COL9A3Q14050 684 aaPredicted RBP18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NECTIN1Q15223 517 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 KCNB2Q92953 911 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 TMEM63CQ9P1W3 806 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 RPAP1Q9BWH6 1393 aaPredicted RBP18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NBPF26B4DH59 902 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NBPF14Q5TI25 921 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NBPF10Q6P3W6 841 aaKnown RBP18.62■□□□□ 0.57
UPF3B-202ENST00000345865 NBPF15Q8N660 670 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 COPRSQ9NQ92 184 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 CCDC171Q6TFL3 1326 aa18.62■□□□□ 0.57
UPF3B-202ENST00000345865 TCHHQ07283 1943 aa18.61■□□□□ 0.57
UPF3B-202ENST00000345865 FOXD4L6Q3SYB3 417 aaPredicted RBP18.61■□□□□ 0.57
UPF3B-202ENST00000345865 FOXD4L3Q6VB84 417 aaPredicted RBP18.61■□□□□ 0.57
UPF3B-202ENST00000345865 LIMCH1Q9UPQ0 1083 aa18.61■□□□□ 0.57
UPF3B-202ENST00000345865 A0A0D9SFI3 127 aa18.61■□□□□ 0.57
UPF3B-202ENST00000345865 CASP7P55210 303 aa18.61■□□□□ 0.57
UPF3B-202ENST00000345865 RABL6Q3YEC7 729 aaPredicted RBP18.61■□□□□ 0.57
UPF3B-202ENST00000345865 DDX54Q8TDD1 881 aaKnown RBP18.61■□□□□ 0.57
UPF3B-202ENST00000345865 EDC3Q96F86 508 aaKnown RBP18.61■□□□□ 0.57
UPF3B-202ENST00000345865 PARP4Q9UKK3 1724 aaKnown RBP18.6■□□□□ 0.57
UPF3B-202ENST00000345865 DTNBO60941 627 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 JAKMIP1Q96N16 626 aaKnown RBP18.6■□□□□ 0.57
UPF3B-202ENST00000345865 LAMB4A4D0S4 1761 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 WDR17Q8IZU2 1322 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 A0A087WZG4 1122 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 MAP4K1Q92918 833 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 ZSWIM6Q9HCJ5 1215 aa18.6■□□□□ 0.57
UPF3B-202ENST00000345865 RBM8AQ9Y5S9 174 aaKnown RBP18.6■□□□□ 0.57
UPF3B-202ENST00000345865 NASPP49321 788 aaPredicted RBP18.59■□□□□ 0.57
UPF3B-202ENST00000345865 PRIM1P49642 420 aaKnown RBP18.59■□□□□ 0.57
UPF3B-202ENST00000345865 PLBD2Q8NHP8 589 aa18.59■□□□□ 0.57
UPF3B-202ENST00000345865 GDPD2Q9HCC8 539 aa18.59■□□□□ 0.57
UPF3B-202ENST00000345865 PRDM11Q9NQV5 511 aa18.59■□□□□ 0.57
UPF3B-202ENST00000345865 SNRKQ9NRH2 765 aa18.59■□□□□ 0.57
UPF3B-202ENST00000345865 DBNLQ9UJU6 430 aaKnown RBP18.59■□□□□ 0.57
UPF3B-202ENST00000345865 TFCP2Q12800 502 aa18.58■□□□□ 0.57
UPF3B-202ENST00000345865 TOM1L2Q6ZVM7 507 aa18.58■□□□□ 0.57
UPF3B-202ENST00000345865 CREB3L3Q68CJ9 461 aa18.58■□□□□ 0.56
UPF3B-202ENST00000345865 ZCRB1Q8TBF4 217 aaKnown RBP18.58■□□□□ 0.56
UPF3B-202ENST00000345865 FSD1Q9BTV5 496 aa18.58■□□□□ 0.56
UPF3B-202ENST00000345865 COL15A1P39059 1388 aa18.58■□□□□ 0.56
UPF3B-202ENST00000345865 WDR33Q9C0J8 1336 aaKnown RBP18.57■□□□□ 0.56
UPF3B-202ENST00000345865 TTLL7Q6ZT98 887 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 TM6SF1Q9BZW5 370 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 RBSNQ9H1K0 784 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 PDRG1Q9NUG6 133 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 TAF6LQ9Y6J9 622 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 NDUFB9Q9Y6M9 179 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 ERBB4Q15303 1308 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 TNNI3KQ59H18 835 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 VPS53Q5VIR6 699 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 ZNF589Q86UQ0 364 aaPredicted RBP18.57■□□□□ 0.56
UPF3B-202ENST00000345865 FPGT-TNNI3KV9GXZ4 949 aa18.57■□□□□ 0.56
UPF3B-202ENST00000345865 PCDH11XQ9BZA7 1347 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 PCDH11YQ9BZA8 1340 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 COL5A2P05997 1499 aaPredicted RBP18.56■□□□□ 0.56
UPF3B-202ENST00000345865 ST3GAL1Q11201 340 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 MED23Q9ULK4 1368 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 HIP1O00291 1037 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 GADD45BO75293 160 aaPredicted RBP18.56■□□□□ 0.56
UPF3B-202ENST00000345865 A1BGP04217 495 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 CHGBP05060 677 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 UBR2Q8IWV8 1755 aa18.56■□□□□ 0.56
UPF3B-202ENST00000345865 SOS2Q07890 1332 aaPredicted RBP18.55■□□□□ 0.56
UPF3B-202ENST00000345865 SLC27A2O14975 620 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 SYT1P21579 422 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 LMBR1LQ6UX01 489 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 CYP46A1Q9Y6A2 500 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 SYCE3A1L190 88 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 FOXO4P98177 505 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 CCDC83Q8IWF9 413 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 KCPQ6ZWJ8 1503 aa18.55■□□□□ 0.56
UPF3B-202ENST00000345865 ATP5JP18859 108 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 USP48Q86UV5 1035 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 DBNDD2Q9BQY9 259 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 ERVV-2B6SEH9 535 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 H7C1W4 665 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 MBD3O95983 291 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 ME3Q16798 604 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 PPP1R9BQ96SB3 815 aa18.54■□□□□ 0.56
UPF3B-202ENST00000345865 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.54■□□□□ 0.56
UPF3B-202ENST00000345865 NUP188Q5SRE5 1749 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 SHANK3Q9BYB0 1731 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 STX6O43752 255 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 ZSCAN22P10073 491 aaPredicted RBP18.53■□□□□ 0.56
UPF3B-202ENST00000345865 ZKSCAN1P17029 563 aaPredicted RBP18.53■□□□□ 0.56
UPF3B-202ENST00000345865 KCNJ4P48050 445 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 NKX1-1Q15270 411 aaPredicted RBP18.53■□□□□ 0.56
UPF3B-202ENST00000345865 SLAIN2Q9P270 581 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 SMC3Q9UQE7 1217 aa18.53■□□□□ 0.56
UPF3B-202ENST00000345865 JCADQ9P266 1359 aa18.52■□□□□ 0.56
UPF3B-202ENST00000345865 LRSAM1Q6UWE0 723 aa18.52■□□□□ 0.56
UPF3B-202ENST00000345865 TPCN1Q9ULQ1 816 aa18.52■□□□□ 0.56
UPF3B-202ENST00000345865 NECAB1Q8N987 351 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms