RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 SNRKQ9NRH2 765 aa15.86■□□□□ 0.13
COL18A1-201ENST00000342220 PRDM4Q9UKN5 801 aa15.86■□□□□ 0.13
COL18A1-201ENST00000342220 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.86■□□□□ 0.13
COL18A1-201ENST00000342220 ATP10DQ9P241 1426 aa15.85■□□□□ 0.13
COL18A1-201ENST00000342220 GOLGA6L3A6NEY3 463 aa15.85■□□□□ 0.13
COL18A1-201ENST00000342220 CCDC57Q2TAC2 916 aa15.85■□□□□ 0.13
COL18A1-201ENST00000342220 LARP6Q9BRS8 491 aaKnown RBP15.85■□□□□ 0.13
COL18A1-201ENST00000342220 XRCC6P12956 609 aaKnown RBP eCLIP15.84■□□□□ 0.135e-11■■□□□ 12.7
COL18A1-201ENST00000342220 CRKLP46109 303 aaKnown RBP15.84■□□□□ 0.13
COL18A1-201ENST00000342220 TFCP2Q12800 502 aa15.84■□□□□ 0.13
COL18A1-201ENST00000342220 SSH3Q8TE77 659 aa15.84■□□□□ 0.13
COL18A1-201ENST00000342220 KAZALD1Q96I82 304 aa15.84■□□□□ 0.13
COL18A1-201ENST00000342220 HDAC5Q9UQL6 1122 aa15.84■□□□□ 0.13
COL18A1-201ENST00000342220 COL18A1P39060 1754 aa15.83■□□□□ 0.13
COL18A1-201ENST00000342220 FOXD4L5Q5VV16 416 aaPredicted RBP15.83■□□□□ 0.13
COL18A1-201ENST00000342220 FOXD4L4Q8WXT5 416 aaPredicted RBP15.83■□□□□ 0.13
COL18A1-201ENST00000342220 SNX21Q969T3 373 aa15.83■□□□□ 0.13
COL18A1-201ENST00000342220 KIF2CQ99661 725 aa15.83■□□□□ 0.13
COL18A1-201ENST00000342220 PUS3Q9BZE2 481 aaKnown RBP15.83■□□□□ 0.13
COL18A1-201ENST00000342220 SPATA31A5Q5VU36 1347 aa15.83■□□□□ 0.12
COL18A1-201ENST00000342220 SPATA31A7Q8IWB4 1347 aa15.83■□□□□ 0.12
COL18A1-201ENST00000342220 NIP7Q9Y221 180 aaKnown RBP eCLIP15.83■□□□□ 0.12
COL18A1-201ENST00000342220 DDIT3P35638 169 aa15.83■□□□□ 0.12
COL18A1-201ENST00000342220 PDCL3Q9H2J4 239 aa15.83■□□□□ 0.12
COL18A1-201ENST00000342220 CNNM1Q9NRU3 951 aa15.83■□□□□ 0.12
COL18A1-201ENST00000342220 FAM208AQ9UK61 1670 aaKnown RBP15.82■□□□□ 0.12
COL18A1-201ENST00000342220 FSD2A1L4K1 749 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 SNAP23O00161 211 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 LRRC24Q50LG9 513 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 PANK2Q9BZ23 570 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 DIAPH3Q9NSV4 1193 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 GNPATO15228 680 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 CD2BP2O95400 341 aaKnown RBP15.82■□□□□ 0.12
COL18A1-201ENST00000342220 ITPK1Q13572 414 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 SEPT12Q8IYM1 358 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 ADAMTS7Q9UKP4 1686 aa15.82■□□□□ 0.12
COL18A1-201ENST00000342220 HSP90AB4PQ58FF6 505 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 EAF2Q96CJ1 260 aaPredicted RBP15.81■□□□□ 0.12
COL18A1-201ENST00000342220 ABCA3Q99758 1704 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 TRIM37O94972 964 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 FKBP4Q02790 459 aaKnown RBP eCLIP15.81■□□□□ 0.12
COL18A1-201ENST00000342220 NKX1-1Q15270 411 aaPredicted RBP15.81■□□□□ 0.12
COL18A1-201ENST00000342220 GPATCH3Q96I76 525 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 FSD1Q9BTV5 496 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 CYP19A1P11511 503 aaPredicted RBP15.81■□□□□ 0.12
COL18A1-201ENST00000342220 JCADQ9P266 1359 aa15.81■□□□□ 0.12
COL18A1-201ENST00000342220 NHSL1Q5SYE7 1610 aa15.8■□□□□ 0.12
COL18A1-201ENST00000342220 TNPO1Q92973 898 aaKnown RBP15.8■□□□□ 0.12
COL18A1-201ENST00000342220 TEX13AQ9BXU3 409 aaPredicted RBP15.8■□□□□ 0.12
COL18A1-201ENST00000342220 UPF3BQ9BZI7 483 aaKnown RBP15.8■□□□□ 0.12
COL18A1-201ENST00000342220 TCIRG1Q13488 830 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 KIAA1211Q6ZU35 1233 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 DDX46Q7L014 1031 aaKnown RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 SRP68Q9UHB9 627 aaKnown RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 CCNL1Q9UK58 526 aaPredicted RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 IQSEC3Q9UPP2 1182 aaPredicted RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 SASH1O94885 1247 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 CHGBP05060 677 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 DBNDD2Q9BQY9 259 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 CCDC87Q9NVE4 849 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 DDX11L8A8MPP1 907 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 IRS4O14654 1257 aaPredicted RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 FOXD4L6Q3SYB3 417 aaPredicted RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 HSP90AB3PQ58FF7 597 aa15.79■□□□□ 0.12
COL18A1-201ENST00000342220 FOXD4L3Q6VB84 417 aaPredicted RBP15.79■□□□□ 0.12
COL18A1-201ENST00000342220 SLFNL1Q499Z3 407 aa15.78■□□□□ 0.12
COL18A1-201ENST00000342220 LDHAL6AQ6ZMR3 332 aa15.78■□□□□ 0.12
COL18A1-201ENST00000342220 PALLDQ8WX93 1383 aa15.78■□□□□ 0.12
COL18A1-201ENST00000342220 IFIT5Q13325 482 aaKnown RBP15.78■□□□□ 0.12
COL18A1-201ENST00000342220 GJD4Q96KN9 370 aaPredicted RBP15.78■□□□□ 0.12
COL18A1-201ENST00000342220 IBTKQ9P2D0 1353 aaPredicted RBP15.78■□□□□ 0.12
COL18A1-201ENST00000342220 RAB11FIP3O75154 756 aa15.77■□□□□ 0.12
COL18A1-201ENST00000342220 METTL24Q5JXM2 366 aa15.77■□□□□ 0.11
COL18A1-201ENST00000342220 CDCA7Q9BWT1 371 aaPredicted RBP15.77■□□□□ 0.11
COL18A1-201ENST00000342220 WWC3Q9ULE0 1092 aa15.77■□□□□ 0.11
COL18A1-201ENST00000342220 CNTROBQ8N137 903 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 ECHDC1Q9NTX5 307 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 CEP126Q9P2H0 1117 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 ARID3AQ99856 593 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 NAP1L2Q9ULW6 460 aaPredicted RBP15.76■□□□□ 0.11
COL18A1-201ENST00000342220 ERC2O15083 957 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 TAF5LO75529 589 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 GREM2Q9H772 168 aa15.76■□□□□ 0.11
COL18A1-201ENST00000342220 N4BP2Q86UW6 1770 aaPredicted RBP15.76■□□□□ 0.11
COL18A1-201ENST00000342220 PTPN12Q05209 780 aaKnown RBP15.75■□□□□ 0.11
COL18A1-201ENST00000342220 LRP10Q7Z4F1 713 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 CCDC191Q8NCU4 936 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 BBXQ8WY36 941 aaPredicted RBP15.75■□□□□ 0.11
COL18A1-201ENST00000342220 K7ELQ4 463 aaPredicted RBP15.75■□□□□ 0.11
COL18A1-201ENST00000342220 RAB3GAP1Q15042 981 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 MAP3K15Q6ZN16 1313 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 SIPA1L3O60292 1781 aaPredicted RBP15.75■□□□□ 0.11
COL18A1-201ENST00000342220 GOLIM4O00461 696 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 ZPR1O75312 459 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 POLA2Q14181 598 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 VPS72Q15906 364 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 ERC1Q8IUD2 1116 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 STK11IPQ8N1F8 1099 aa15.75■□□□□ 0.11
COL18A1-201ENST00000342220 CIZ1Q9ULV3 898 aaPredicted RBP15.75■□□□□ 0.11
COL18A1-201ENST00000342220 NEK4P51957 841 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms