RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ABCA10Q8WWZ4 1543 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 RTEL1-TNFRSF6BF6WH68 1400 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 GSTTP1A0A1W2PQM5 241 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 CAPN2P17655 700 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 RXRAP19793 462 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 FAM200AQ8TCP9 573 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 NCOA1Q15788 1441 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 N4BP3O15049 544 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 MCM5P33992 734 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 RAB3GAP1Q15042 981 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 CAPZA3Q96KX2 299 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 NEK1Q96PY6 1258 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 NOP2P46087 812 aaKnown RBP10.03□□□□□ -0.8
RTN3-202ENST00000339997 TCERG1LQ5VWI1 586 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 ARFGAP3Q9NP61 516 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 BMP2KQ9NSY1 1161 aaPredicted RBP10.03□□□□□ -0.8
RTN3-202ENST00000339997 PPP1R1BQ9UD71 204 aaPredicted RBP10.03□□□□□ -0.8
RTN3-202ENST00000339997 SLC12A7Q9Y666 1083 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 TYRO3Q06418 890 aa10.03□□□□□ -0.8
RTN3-202ENST00000339997 SYT1P21579 422 aa10.02□□□□□ -0.8
RTN3-202ENST00000339997 PAFAH1B1P43034 410 aa10.02□□□□□ -0.8
RTN3-202ENST00000339997 PROSER2Q86WR7 435 aaPredicted RBP10.02□□□□□ -0.8
RTN3-202ENST00000339997 RHPN1Q8TCX5 695 aa10.02□□□□□ -0.8
RTN3-202ENST00000339997 CCDC97Q96F63 343 aaPredicted RBP10.02□□□□□ -0.8
RTN3-202ENST00000339997 SLC26A6Q9BXS9 759 aa10.02□□□□□ -0.8
RTN3-202ENST00000339997 DNMBPQ6XZF7 1577 aa10.02□□□□□ -0.8
RTN3-202ENST00000339997 GOLGA8AA7E2F4 631 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 MTIF2P46199 727 aaKnown RBP10.02□□□□□ -0.81
RTN3-202ENST00000339997 GBP3Q9H0R5 595 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 MMRN2Q9H8L6 949 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 ZRANB1Q9UGI0 708 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 MAP3K2Q9Y2U5 619 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 ATRIPQ8WXE1 791 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 ATAD2Q6PL18 1390 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 POLA1P09884 1462 aaPredicted RBP10.02□□□□□ -0.81
RTN3-202ENST00000339997 ZEB2O60315 1214 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 ARID5AQ03989 594 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 FAM160A1Q05DH4 1040 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 MICALL1Q8N3F8 863 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 VPS18Q9P253 973 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 RBM8AQ9Y5S9 174 aaKnown RBP10.02□□□□□ -0.81
RTN3-202ENST00000339997 PLEKHH1Q9ULM0 1364 aa10.02□□□□□ -0.81
RTN3-202ENST00000339997 AK2P54819 239 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 IQCEQ6IPM2 695 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 CEP57Q86XR8 500 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 ZNF397Q8NF99 534 aaPredicted RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 ESYT1Q9BSJ8 1104 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 ZNF692Q9BU19 519 aaPredicted RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 CCDC94Q9BW85 323 aaPredicted RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 FOXO3O43524 673 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 GNL3LQ9NVN8 582 aaKnown RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 SYKP43405 635 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 GTF2A1P52655 376 aaPredicted RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 PAXBP1Q9Y5B6 917 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 KLF18A0A0U1RQI7 1052 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 RIOK3O14730 519 aaKnown RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 F13A1P00488 732 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 ZNF76P36508 570 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 IARSP41252 1262 aaKnown RBP10.01□□□□□ -0.81
RTN3-202ENST00000339997 CHMP4BP1P59074 171 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 IFNKQ9P0W0 207 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 ARHGAP5Q13017 1502 aa10.01□□□□□ -0.81
RTN3-202ENST00000339997 NUTM2BA6NNL0 878 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 NUTM2EB1AL46 878 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 MPHOSPH10O00566 681 aaKnown RBP10□□□□□ -0.81
RTN3-202ENST00000339997 GADD45BO75293 160 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 GSDMDP57764 484 aa10□□□□□ -0.81
RTN3-202ENST00000339997 CCDC102BQ68D86 513 aa10□□□□□ -0.81
RTN3-202ENST00000339997 NUTM2AQ8IVF1 878 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 UTP14AQ9BVJ6 771 aaKnown RBP10□□□□□ -0.81
RTN3-202ENST00000339997 PRDM11Q9NQV5 511 aa10□□□□□ -0.81
RTN3-202ENST00000339997 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10□□□□□ -0.81
RTN3-202ENST00000339997 HGSO14964 777 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 YEATS4O95619 227 aa10□□□□□ -0.81
RTN3-202ENST00000339997 NLRP5P59047 1200 aa10□□□□□ -0.81
RTN3-202ENST00000339997 SLU7O95391 586 aaKnown RBP10□□□□□ -0.81
RTN3-202ENST00000339997 HDAC1Q13547 482 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 MAP9Q49MG5 647 aa10□□□□□ -0.81
RTN3-202ENST00000339997 FBXO31Q5XUX0 539 aaPredicted RBP10□□□□□ -0.81
RTN3-202ENST00000339997 A0A1B0GVL5 298 aa10□□□□□ -0.81
RTN3-202ENST00000339997 SMIM23A6NLE4 172 aa10□□□□□ -0.81
RTN3-202ENST00000339997 AKR1B10O60218 316 aa10□□□□□ -0.81
RTN3-202ENST00000339997 ERCC3P19447 782 aa10□□□□□ -0.81
RTN3-202ENST00000339997 PKP1Q13835 747 aa10□□□□□ -0.81
RTN3-202ENST00000339997 MKNK2Q9HBH9 465 aa10□□□□□ -0.81
RTN3-202ENST00000339997 GCC2Q8IWJ2 1684 aa10□□□□□ -0.81
RTN3-202ENST00000339997 DAPK1P53355 1430 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 Q6ZUG5 572 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 GDAP1L1Q96MZ0 367 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 PLIN2Q99541 437 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 THOC2Q8NI27 1593 aaKnown RBP9.99□□□□□ -0.81
RTN3-202ENST00000339997 CTAGE5O15320 804 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 TRIM21P19474 475 aaKnown RBP9.99□□□□□ -0.81
RTN3-202ENST00000339997 WWC2Q6AWC2 1192 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 SLC39A6Q13433 755 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 TMEM67Q5HYA8 995 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 ZSCAN25Q6NSZ9 544 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 EVI5LQ96CN4 794 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 TOPBP1Q92547 1522 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 GAS2L3Q86XJ1 694 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms