RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 COMMD10Q9Y6G5 202 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 SMIM23A6NLE4 172 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 TMEM266Q2M3C6 531 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 TTC14Q96N46 770 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 RARSP54136 660 aaKnown RBP11.22□□□□□ -0.61
COL4A6-201ENST00000334504 KARSQ15046 597 aaKnown RBP11.22□□□□□ -0.61
COL4A6-201ENST00000334504 HDXQ7Z353 690 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 SELENOOQ9BVL4 669 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 SPG7Q9UQ90 795 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 CCDC196A0A1B0GTZ2 297 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 TUBB4AP04350 444 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 FAM160A1Q05DH4 1040 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 TOP2AP11388 1531 aaKnown RBP11.21□□□□□ -0.61
COL4A6-201ENST00000334504 TRIM21P19474 475 aaKnown RBP11.21□□□□□ -0.61
COL4A6-201ENST00000334504 HS1BP3Q53T59 392 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 CFAP70Q5T0N1 1121 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 DDX12PQ92771 950 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 SAMD15Q9P1V8 674 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 WWC3Q9ULE0 1092 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 MINDY4BA8MYZ0 360 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 NLRP5P59047 1200 aa11.21□□□□□ -0.61
COL4A6-201ENST00000334504 RRAGDQ9NQL2 400 aaPredicted RBP11.21□□□□□ -0.61
COL4A6-201ENST00000334504 KANK3Q6NY19 840 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 PROSER2Q86WR7 435 aaPredicted RBP11.21□□□□□ -0.62
COL4A6-201ENST00000334504 PSMD1Q99460 953 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 FEZ2Q9UHY8 353 aaPredicted RBP11.21□□□□□ -0.62
COL4A6-201ENST00000334504 GOLIM4O00461 696 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 TRIM47Q96LD4 638 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 SLC12A5Q9H2X9 1139 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 ANAPC4Q9UJX5 808 aa11.21□□□□□ -0.62
COL4A6-201ENST00000334504 PPFIBP2Q8ND30 876 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 NKTRP30414 1462 aaKnown RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 CUX1P39880 1505 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 KIF3CO14782 793 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 BUB1BO60566 1050 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 PPFIA3O75145 1194 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 NBPF8Q3BBV2 869 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 FERMT2Q96AC1 680 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 STIM2Q9P246 746 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 TACC1O75410 805 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 WDR78Q5VTH9 848 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 RAB34Q9BZG1 259 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 PCK1P35558 622 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 GRIPAP1Q4V328 841 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 RRAGBQ5VZM2 374 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 ABTB2Q8N961 1025 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 AFAP1L1Q8TED9 768 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 IFT81Q8WYA0 676 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 TMX3Q96JJ7 454 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 RBM28Q9NW13 759 aaKnown RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 ZNF644Q9H582 1327 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 KRT13P13646 458 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 TERF1P54274 439 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 ATP11AP98196 1134 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC85AQ96PX6 553 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 CTAGE1Q96RT6 745 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 SEC62Q99442 399 aaKnown RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 LMNTD2Q8IXW0 634 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC144CPQ8IYA2 1237 aa11.2□□□□□ -0.62
COL4A6-201ENST00000334504 SREK1Q8WXA9 508 aaKnown RBP11.2□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC194A0A1B0GVG4 234 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 SETSIPP0DME0 302 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 SYKP43405 635 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CABP4P57796 275 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 AMPD3Q01432 767 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC77Q9BR77 488 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 ERBINQ96RT1 1412 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 ZNF569Q5MCW4 686 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 RPUSD2Q8IZ73 545 aaKnown RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CEP120Q8N960 986 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 TMPOP42166 694 aaKnown RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 TPD52P55327 224 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 TNIP1Q15025 636 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 SETDB1Q15047 1291 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 SSH1Q8WYL5 1049 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CALML4Q96GE6 196 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 ZNF213O14771 459 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 PSMC4P43686 418 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CTCFLQ8NI51 663 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CWC25Q9NXE8 425 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 IGHDP01880 384 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 IDEP14735 1019 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 INPP5BP32019 993 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC8Q9H0W5 538 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-201ENST00000334504 KCNK9Q9NPC2 374 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 LZTFL1Q9NQ48 299 aa11.19□□□□□ -0.62
COL4A6-201ENST00000334504 CETN1Q12798 172 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 B4GALNT4Q76KP1 1039 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 NAPBQ9H115 298 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 SWAP70Q9UH65 585 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 FYCO1Q9BQS8 1478 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 MMRN2Q9H8L6 949 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 USP16Q9Y5T5 823 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 POLA1P09884 1462 aaPredicted RBP11.18□□□□□ -0.62
COL4A6-201ENST00000334504 BTBD11A6QL63 1104 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 ZWINTO95229 277 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 IFIT1P09914 478 aaKnown RBP11.18□□□□□ -0.62
COL4A6-201ENST00000334504 CCDC63Q8NA47 563 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 STMN2Q93045 179 aa11.18□□□□□ -0.62
COL4A6-201ENST00000334504 IFIT3O14879 490 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms