RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 HSP90AB3PQ58FF7 597 aa20.76■□□□□ 0.91
HDDC2-201ENST00000318787 LAMB2P55268 1798 aa20.75■□□□□ 0.91
HDDC2-201ENST00000318787 TCERG1O14776 1098 aaKnown RBP20.75■□□□□ 0.91
HDDC2-201ENST00000318787 NTSR2O95665 410 aa20.75■□□□□ 0.91
HDDC2-201ENST00000318787 TSPYL6Q8N831 410 aa20.75■□□□□ 0.91
HDDC2-201ENST00000318787 RPGRQ92834 1020 aaKnown RBP20.75■□□□□ 0.91
HDDC2-201ENST00000318787 UTP14AQ9BVJ6 771 aaKnown RBP20.75■□□□□ 0.91
HDDC2-201ENST00000318787 IBTKQ9P2D0 1353 aaPredicted RBP20.75■□□□□ 0.91
HDDC2-201ENST00000318787 ANKRD13DQ6ZTN6 518 aa20.74■□□□□ 0.91
HDDC2-201ENST00000318787 PHAXQ9H814 394 aaKnown RBP20.74■□□□□ 0.91
HDDC2-201ENST00000318787 DICER1Q9UPY3 1922 aaKnown RBP20.73■□□□□ 0.91
HDDC2-201ENST00000318787 NFKBIEO00221 500 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 LMNB1P20700 586 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 KCNA4P22459 653 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 TCIRG1Q13488 830 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 CCDC30Q5VVM6 783 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 RIC3Q7Z5B4 369 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 PLBD2Q8NHP8 589 aa20.73■□□□□ 0.91
HDDC2-201ENST00000318787 ATP5J2-PTCD1G3V325 749 aa20.72■□□□□ 0.91
HDDC2-201ENST00000318787 GOLGA2Q08379 1002 aa20.72■□□□□ 0.91
HDDC2-201ENST00000318787 TRMT112Q9UI30 125 aaKnown RBP20.72■□□□□ 0.91
HDDC2-201ENST00000318787 ALDH1B1P30837 517 aa20.72■□□□□ 0.91
HDDC2-201ENST00000318787 TWISTNBQ3B726 338 aaPredicted RBP20.72■□□□□ 0.91
HDDC2-201ENST00000318787 NLRP10Q86W26 655 aa20.72■□□□□ 0.91
HDDC2-201ENST00000318787 TAOK3Q9H2K8 898 aa20.72■□□□□ 0.91
HDDC2-201ENST00000318787 KLRG2A4D1S0 409 aaPredicted RBP20.71■□□□□ 0.91
HDDC2-201ENST00000318787 PRELPP51888 382 aa20.71■□□□□ 0.91
HDDC2-201ENST00000318787 SOGA3Q5TF21 947 aa20.71■□□□□ 0.91
HDDC2-201ENST00000318787 OLFM4Q6UX06 510 aa20.71■□□□□ 0.91
HDDC2-201ENST00000318787 NLRP3Q96P20 1036 aa20.71■□□□□ 0.91
HDDC2-201ENST00000318787 STK31Q9BXU1 1019 aa20.71■□□□□ 0.91
HDDC2-201ENST00000318787 IL16Q14005 1332 aa20.7■□□□□ 0.9
HDDC2-201ENST00000318787 FANCIQ9NVI1 1328 aa20.7■□□□□ 0.9
HDDC2-201ENST00000318787 HCLS1P14317 486 aaPredicted RBP20.7■□□□□ 0.9
HDDC2-201ENST00000318787 CCDC93Q567U6 631 aa20.7■□□□□ 0.9
HDDC2-201ENST00000318787 RTL5Q5HYW3 569 aaPredicted RBP20.7■□□□□ 0.9
HDDC2-201ENST00000318787 SYNE4Q8N205 404 aa20.7■□□□□ 0.9
HDDC2-201ENST00000318787 DDX60Q8IY21 1712 aaKnown RBP20.69■□□□□ 0.9
HDDC2-201ENST00000318787 TAF1P21675 1872 aa20.69■□□□□ 0.9
HDDC2-201ENST00000318787 C3orf67Q6ZVT6 689 aa20.69■□□□□ 0.9
HDDC2-201ENST00000318787 RBM17Q96I25 401 aaKnown RBP20.69■□□□□ 0.9
HDDC2-201ENST00000318787 CHMP4AQ9BY43 222 aa20.69■□□□□ 0.9
HDDC2-201ENST00000318787 NMRK2Q9NPI5 230 aa20.69■□□□□ 0.9
HDDC2-201ENST00000318787 RIC1Q4ADV7 1423 aa20.68■□□□□ 0.9
HDDC2-201ENST00000318787 WDR63Q8IWG1 891 aa20.68■□□□□ 0.9
HDDC2-201ENST00000318787 KDM2BQ8NHM5 1336 aa20.67■□□□□ 0.9
HDDC2-201ENST00000318787 SH3TC1Q8TE82 1336 aa20.67■□□□□ 0.9
HDDC2-201ENST00000318787 CRY2Q49AN0 593 aa20.67■□□□□ 0.9
HDDC2-201ENST00000318787 MYD88Q99836 296 aa20.67■□□□□ 0.9
HDDC2-201ENST00000318787 KIF3CO14782 793 aa20.66■□□□□ 0.9
HDDC2-201ENST00000318787 DDX58O95786 925 aaKnown RBP20.66■□□□□ 0.9
HDDC2-201ENST00000318787 FAM89AQ96GI7 184 aa20.66■□□□□ 0.9
HDDC2-201ENST00000318787 RNF123Q5XPI4 1314 aa20.66■□□□□ 0.9
HDDC2-201ENST00000318787 EXOSC9Q06265 439 aaKnown RBP20.65■□□□□ 0.9
HDDC2-201ENST00000318787 PPEF1O14829 653 aaPredicted RBP20.64■□□□□ 0.89
HDDC2-201ENST00000318787 C16orf71Q8IYS4 520 aaPredicted RBP20.64■□□□□ 0.89
HDDC2-201ENST00000318787 C7orf43Q8WVR3 580 aa20.64■□□□□ 0.89
HDDC2-201ENST00000318787 ISCA1Q9BUE6 129 aa20.64■□□□□ 0.89
HDDC2-201ENST00000318787 ZNF277Q9NRM2 450 aaPredicted RBP20.64■□□□□ 0.89
HDDC2-201ENST00000318787 CACNA1FO60840 1977 aa20.64■□□□□ 0.89
HDDC2-201ENST00000318787 SLC4A2P04920 1241 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 RTKN2Q8IZC4 609 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 TMX4Q9H1E5 349 aaPredicted RBP20.63■□□□□ 0.89
HDDC2-201ENST00000318787 MYH16Q9H6N6 1097 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 RRAGCQ9HB90 399 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 SPINK5Q9NQ38 1064 aaPredicted RBP20.63■□□□□ 0.89
HDDC2-201ENST00000318787 MAP3K2Q9Y2U5 619 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 LTBP3Q9NS15 1303 aa20.63■□□□□ 0.89
HDDC2-201ENST00000318787 HOXA10P31260 410 aaPredicted RBP20.62■□□□□ 0.89
HDDC2-201ENST00000318787 FKBP4Q02790 459 aaKnown RBP eCLIP20.62■□□□□ 0.89
HDDC2-201ENST00000318787 SLC10A5Q5PT55 438 aa20.62■□□□□ 0.89
HDDC2-201ENST00000318787 SLC51AQ86UW1 340 aa20.62■□□□□ 0.89
HDDC2-201ENST00000318787 CRAMP1Q96RY5 1269 aa20.62■□□□□ 0.89
HDDC2-201ENST00000318787 ABCC4O15439 1325 aa20.62■□□□□ 0.89
HDDC2-201ENST00000318787 ZC3H4Q9UPT8 1303 aaKnown RBP20.62■□□□□ 0.89
HDDC2-201ENST00000318787 DDX46Q7L014 1031 aaKnown RBP20.61■□□□□ 0.89
HDDC2-201ENST00000318787 PI4KAP2A4QPH2 592 aa20.6■□□□□ 0.89
HDDC2-201ENST00000318787 DPY19L2Q6NUT2 758 aa20.6■□□□□ 0.89
HDDC2-201ENST00000318787 G2E3Q7L622 706 aa20.6■□□□□ 0.89
HDDC2-201ENST00000318787 PI4KAP1Q8N8J0 262 aa20.6■□□□□ 0.89
HDDC2-201ENST00000318787 JARID2Q92833 1246 aaPredicted RBP20.6■□□□□ 0.89
HDDC2-201ENST00000318787 CEP350Q5VT06 3117 aa20.6■□□□□ 0.89
HDDC2-201ENST00000318787 GLTPD2A6NH11 291 aa20.59■□□□□ 0.89
HDDC2-201ENST00000318787 IRS4O14654 1257 aaPredicted RBP20.59■□□□□ 0.89
HDDC2-201ENST00000318787 METTL22Q9BUU2 404 aaPredicted RBP20.59■□□□□ 0.89
HDDC2-201ENST00000318787 NEXNQ0ZGT2 675 aa20.59■□□□□ 0.89
HDDC2-201ENST00000318787 FKBP5Q13451 457 aaPredicted RBP20.59■□□□□ 0.89
HDDC2-201ENST00000318787 KSR2Q6VAB6 950 aa20.59■□□□□ 0.89
HDDC2-201ENST00000318787 CWC25Q9NXE8 425 aaPredicted RBP20.59■□□□□ 0.89
HDDC2-201ENST00000318787 VAMP4O75379 141 aa20.58■□□□□ 0.88
HDDC2-201ENST00000318787 IARSP41252 1262 aaKnown RBP20.58■□□□□ 0.88
HDDC2-201ENST00000318787 MYH3P11055 1940 aa20.57■□□□□ 0.88
HDDC2-201ENST00000318787 FLIIQ13045 1269 aa20.57■□□□□ 0.88
HDDC2-201ENST00000318787 CC2D2BQ6DHV5 1058 aa20.57■□□□□ 0.88
HDDC2-201ENST00000318787 ZBTB38Q8NAP3 1195 aaPredicted RBP20.57■□□□□ 0.88
HDDC2-201ENST00000318787 CCDC191Q8NCU4 936 aa20.57■□□□□ 0.88
HDDC2-201ENST00000318787 TOMM70O94826 608 aa20.56■□□□□ 0.88
HDDC2-201ENST00000318787 TRIM28Q13263 835 aaKnown RBP20.56■□□□□ 0.88
HDDC2-201ENST00000318787 CCDC85AQ96PX6 553 aaPredicted RBP20.56■□□□□ 0.88
HDDC2-201ENST00000318787 SPEF2Q9C093 1822 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms