RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 NUTM1Q86Y26 1132 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 AK7Q96M32 723 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 ZSCAN12O43309 604 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 FAM160A1Q05DH4 1040 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 PDE4CQ08493 712 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 LRMPQ12912 555 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 RRS1Q15050 365 aaKnown RBP5.6□□□□□ -1.51
PTPN13-201ENST00000316707 MUM1L1Q5H9M0 696 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 G2E3Q7L622 706 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 DNAJC25Q9H1X3 360 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 AP5Z1O43299 807 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 HMGB1P09429 215 aaKnown RBP5.6□□□□□ -1.51
PTPN13-201ENST00000316707 ETF1P62495 437 aaKnown RBP5.6□□□□□ -1.51
PTPN13-201ENST00000316707 NECTIN1Q15223 517 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 KMT5BQ4FZB7 885 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 HDGFL1Q5TGJ6 251 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 RCOR1Q9UKL0 485 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 CRB1P82279 1406 aa5.6□□□□□ -1.51
PTPN13-201ENST00000316707 LIG1P18858 919 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 TNNT3P45378 269 aaPredicted RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 TSHZ3Q63HK5 1081 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 IPO4Q8TEX9 1081 aaKnown RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 TMEM51Q9NW97 253 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 ZCCHC11Q5TAX3 1644 aaKnown RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 NEO1Q92859 1461 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 FAM177BA6PVY3 158 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 CBFA2T2O43439 604 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 CAMK4Q16566 473 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 H2AFXP16104 143 aaPredicted RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 IQCB1Q15051 598 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 TAF7Q15545 349 aaPredicted RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 GOLGA6L1Q8N7Z2 621 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 FAM53CQ9NYF3 392 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 PXDNLA1KZ92 1463 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 PPRC1Q5VV67 1664 aaKnown RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 A0A1W2PQ27 194 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 A0A1W2PQ64 194 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 A0A1W2PQD8 194 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 FBXO38Q6PIJ6 1188 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 SDF4Q9BRK5 362 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 SPG7Q9UQ90 795 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 FLT4P35916 1363 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 RGS22Q8NE09 1264 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 DNAAF4Q8WXU2 420 aa5.59□□□□□ -1.51
PTPN13-201ENST00000316707 RBM8AQ9Y5S9 174 aaKnown RBP5.59□□□□□ -1.51
PTPN13-201ENST00000316707 ME3Q16798 604 aa5.59□□□□□ -1.52
PTPN13-201ENST00000316707 NOM1Q5C9Z4 860 aaKnown RBP5.59□□□□□ -1.52
PTPN13-201ENST00000316707 CREB3L3Q68CJ9 461 aa5.59□□□□□ -1.52
PTPN13-201ENST00000316707 JARID2Q92833 1246 aaPredicted RBP5.59□□□□□ -1.52
PTPN13-201ENST00000316707 MPHOSPH8Q99549 860 aa5.59□□□□□ -1.52
PTPN13-201ENST00000316707 G3BP1Q13283 466 aaKnown RBP eCLIP5.58□□□□□ -1.52
PTPN13-201ENST00000316707 HOMER1Q86YM7 354 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 QRICH2Q9H0J4 1663 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 POTEB2H3BUK9 544 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 LRRFIP1Q32MZ4 808 aaKnown RBP5.58□□□□□ -1.52
PTPN13-201ENST00000316707 KDRP35968 1356 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 GTF2E1P29083 439 aaPredicted RBP5.58□□□□□ -1.52
PTPN13-201ENST00000316707 BRF1Q92994 677 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 NUTM2FA1L443 756 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 ELF2Q15723 593 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 TPRNQ4KMQ1 711 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 NUTM2GQ5VZR2 741 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 GNAT3A8MTJ3 354 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 TULP2O00295 520 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 MTHFSDQ2M296 383 aaKnown RBP5.58□□□□□ -1.52
PTPN13-201ENST00000316707 EFCC1Q9HA90 598 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 DNAI1Q9UI46 699 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 KIF1BO60333 1816 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 EFCAB8A8MWE9 144 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 IGSF3O75054 1194 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 DDX11Q96FC9 970 aa5.58□□□□□ -1.52
PTPN13-201ENST00000316707 U3KPZ7 1027 aaPredicted RBP5.58□□□□□ -1.52
PTPN13-201ENST00000316707 FBLN1P23142 703 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 RPS6KB1P23443 525 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 ARHGAP29Q52LW3 1261 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 MRPS27Q92552 414 aaKnown RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 BPIFA3Q9BQP9 254 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 NAP1L2Q9ULW6 460 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 CHMP3Q9Y3E7 222 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 PHLPP2Q6ZVD8 1323 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 SBNO1A3KN83 1393 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 IVLP07476 585 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 TUBB2AQ13885 445 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 CDC37L1Q7L3B6 337 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 FSD1Q9BTV5 496 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 TUBB2BQ9BVA1 445 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 TPCN1Q9ULQ1 816 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 ERLIN1O75477 346 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 AMPHP49418 695 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC144BQ3MJ40 725 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC144CPQ8IYA2 1237 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 TFIP11Q9UBB9 837 aaKnown RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 NRBP1Q9UHY1 535 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 RFX7Q2KHR2 1363 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 IGSF1Q8N6C5 1336 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 IRX5P78411 483 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 EXOC4Q96A65 974 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 RASSF4Q9H2L5 321 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 USP31Q70CQ4 1352 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms