RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 TRAK2O60296 914 aa15.74■□□□□ 0.11
RFFL-201ENST00000315249 KIF5BP33176 963 aa15.74■□□□□ 0.11
RFFL-201ENST00000315249 MPHOSPH6Q99547 160 aaKnown RBP15.74■□□□□ 0.11
RFFL-201ENST00000315249 CDCA7Q9BWT1 371 aaPredicted RBP15.74■□□□□ 0.11
RFFL-201ENST00000315249 NEBLO76041 1014 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 MICU3Q86XE3 530 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 RBM17Q96I25 401 aaKnown RBP15.73■□□□□ 0.11
RFFL-201ENST00000315249 HMGB1P09429 215 aaKnown RBP15.73■□□□□ 0.11
RFFL-201ENST00000315249 KSR2Q6VAB6 950 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 CCDC24Q8N4L8 307 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 PPFIA3O75145 1194 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 SSR1P43307 286 aaKnown RBP15.73■□□□□ 0.11
RFFL-201ENST00000315249 NASPP49321 788 aaPredicted RBP15.73■□□□□ 0.11
RFFL-201ENST00000315249 SLC4A4Q9Y6R1 1079 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 MAP3K19Q56UN5 1328 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 RNMTO43148 476 aaKnown RBP15.73■□□□□ 0.11
RFFL-201ENST00000315249 TMEM266Q2M3C6 531 aa15.73■□□□□ 0.11
RFFL-201ENST00000315249 RAB34Q9BZG1 259 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 C8orf58Q8NAV2 365 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 MAP3K5Q99683 1374 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 MEIS3Q99687 375 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 BIN2Q9UBW5 565 aaPredicted RBP15.72■□□□□ 0.11
RFFL-201ENST00000315249 PTPRKQ15262 1439 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 EYA3Q99504 573 aa15.72■□□□□ 0.11
RFFL-201ENST00000315249 BAG4O95429 457 aaKnown RBP15.72■□□□□ 0.11
RFFL-201ENST00000315249 DESP17661 470 aa15.71■□□□□ 0.11
RFFL-201ENST00000315249 GPR162Q16538 588 aa15.71■□□□□ 0.11
RFFL-201ENST00000315249 CKAP2LQ8IYA6 745 aa15.71■□□□□ 0.11
RFFL-201ENST00000315249 PPP1R12BO60237 982 aaPredicted RBP15.71■□□□□ 0.11
RFFL-201ENST00000315249 EIF2AK4Q9P2K8 1649 aaKnown RBP15.71■□□□□ 0.11
RFFL-201ENST00000315249 CWF19L2Q2TBE0 894 aaKnown RBP15.71■□□□□ 0.11
RFFL-201ENST00000315249 MSL1Q68DK7 614 aa15.71■□□□□ 0.11
RFFL-201ENST00000315249 H0YIN7 160 aa15.71■□□□□ 0.1
RFFL-201ENST00000315249 CCDC192P0DO97 292 aa15.71■□□□□ 0.1
RFFL-201ENST00000315249 ZFYVE16Q7Z3T8 1539 aa15.71■□□□□ 0.1
RFFL-201ENST00000315249 NFKBIBQ15653 356 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 PRAG1Q86YV5 1406 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 PPM1FP49593 454 aaPredicted RBP15.7■□□□□ 0.1
RFFL-201ENST00000315249 MYO5CQ9NQX4 1742 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 LUC7LQ9NQ29 371 aaKnown RBP15.7■□□□□ 0.1
RFFL-201ENST00000315249 CCDC39Q9UFE4 941 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 KLHL10Q6JEL2 608 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 PA2G4Q9UQ80 394 aaKnown RBP15.7■□□□□ 0.1
RFFL-201ENST00000315249 A0A1W2PP64 1363 aa15.7■□□□□ 0.1
RFFL-201ENST00000315249 DRC1Q96MC2 740 aa15.69■□□□□ 0.1
RFFL-201ENST00000315249 QTRT2Q9H974 415 aaKnown RBP15.69■□□□□ 0.1
RFFL-201ENST00000315249 HCLS1P14317 486 aaPredicted RBP15.69■□□□□ 0.1
RFFL-201ENST00000315249 NUP160Q12769 1436 aa15.69■□□□□ 0.1
RFFL-201ENST00000315249 IFIT1BQ5T764 474 aaKnown RBP15.69■□□□□ 0.1
RFFL-201ENST00000315249 CCDC12Q8WUD4 166 aaPredicted RBP15.69■□□□□ 0.1
RFFL-201ENST00000315249 DNAI2Q9GZS0 605 aa15.69■□□□□ 0.1
RFFL-201ENST00000315249 MYO6Q9UM54 1294 aa15.69■□□□□ 0.1
RFFL-201ENST00000315249 SLC9C2Q5TAH2 1124 aa15.69■□□□□ 0.1
RFFL-201ENST00000315249 KRT24Q2M2I5 525 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 EIF5P55010 431 aaKnown RBP15.68■□□□□ 0.1
RFFL-201ENST00000315249 FAM89AQ96GI7 184 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 MAGEB6P1A0A0J9YX57 407 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 USP16Q9Y5T5 823 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 MIGA1Q8NAN2 632 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 NCOA7Q8NI08 942 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 SLC26A6Q9BXS9 759 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 RALGAPBQ86X10 1494 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 RHPN1Q8TCX5 695 aa15.68■□□□□ 0.1
RFFL-201ENST00000315249 UFL1O94874 794 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 IL15P40933 162 aaPredicted RBP15.67■□□□□ 0.1
RFFL-201ENST00000315249 CCDC181Q5TID7 509 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 LDHBP07195 334 aaKnown RBP15.67■□□□□ 0.1
RFFL-201ENST00000315249 CFAP74Q9C0B2 1584 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 ARHGEF10O15013 1369 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 METAP2P50579 478 aaKnown RBP eCLIP15.67■□□□□ 0.1
RFFL-201ENST00000315249 SKAP1Q86WV1 359 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 MAGEB6Q8N7X4 407 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 IL16Q14005 1332 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 CAMK4Q16566 473 aa15.67■□□□□ 0.1
RFFL-201ENST00000315249 FAM177A1Q8N128 213 aaPredicted RBP15.67■□□□□ 0.1
RFFL-201ENST00000315249 MPNDQ8N594 471 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 EIF6P56537 245 aaKnown RBP15.66■□□□□ 0.1
RFFL-201ENST00000315249 WTAPQ15007 396 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 ANKRD2Q9GZV1 360 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 IARSP41252 1262 aaKnown RBP15.66■□□□□ 0.1
RFFL-201ENST00000315249 TNNI2P48788 182 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 ZNF790Q6PG37 636 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 CCDC150Q8NCX0 1101 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 MCM9Q9NXL9 1143 aa15.66■□□□□ 0.1
RFFL-201ENST00000315249 LTKP29376 864 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 EAPPQ56P03 285 aaPredicted RBP15.65■□□□□ 0.1
RFFL-201ENST00000315249 LARGE2Q8N3Y3 721 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 NUP62CLQ9H1M0 184 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 CFAP43Q8NDM7 1665 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 POTEJP0CG39 1038 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 CHD1O14646 1710 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 MAST1Q9Y2H9 1570 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 TSG101Q99816 390 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 PHACTR3Q96KR7 559 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 DISP1Q96F81 1524 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 A1BGP04217 495 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 NEFHP12036 1026 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 PRKG1Q13976 671 aa15.65■□□□□ 0.1
RFFL-201ENST00000315249 HEATR3Q7Z4Q2 680 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms