RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HSP90AB3PQ58FF7 597 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 OLFM4Q6UX06 510 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 C3orf67Q6ZVT6 689 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 FAM9BQ8IZU0 186 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 TSPYL6Q8N831 410 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 ZNF428Q96B54 188 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 NMRK2Q9NPI5 230 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 HYPKQ9NX55 129 aa21.12■□□□□ 0.97
LSM1-201ENST00000311351 KIF3CO14782 793 aa21.11■□□□□ 0.97
LSM1-201ENST00000311351 TCIRG1Q13488 830 aa21.11■□□□□ 0.97
LSM1-201ENST00000311351 NLRP10Q86W26 655 aa21.11■□□□□ 0.97
LSM1-201ENST00000311351 C7orf43Q8WVR3 580 aa21.11■□□□□ 0.97
LSM1-201ENST00000311351 UTP14AQ9BVJ6 771 aaKnown RBP21.11■□□□□ 0.97
LSM1-201ENST00000311351 DDX60Q8IY21 1712 aaKnown RBP21.1■□□□□ 0.97
LSM1-201ENST00000311351 PLBD2Q8NHP8 589 aa21.1■□□□□ 0.97
LSM1-201ENST00000311351 TAOK3Q9H2K8 898 aa21.1■□□□□ 0.97
LSM1-201ENST00000311351 LTBP3Q9NS15 1303 aa21.09■□□□□ 0.97
LSM1-201ENST00000311351 ANKRD13DQ6ZTN6 518 aa21.09■□□□□ 0.97
LSM1-201ENST00000311351 RPGRQ92834 1020 aaKnown RBP21.09■□□□□ 0.97
LSM1-201ENST00000311351 PHAXQ9H814 394 aaKnown RBP21.09■□□□□ 0.97
LSM1-201ENST00000311351 IL16Q14005 1332 aa21.08■□□□□ 0.97
LSM1-201ENST00000311351 CCDC93Q567U6 631 aa21.08■□□□□ 0.97
LSM1-201ENST00000311351 SOGA3Q5TF21 947 aa21.08■□□□□ 0.97
LSM1-201ENST00000311351 SLC51AQ86UW1 340 aa21.08■□□□□ 0.97
LSM1-201ENST00000311351 SYNE4Q8N205 404 aa21.08■□□□□ 0.97
LSM1-201ENST00000311351 ZC3H4Q9UPT8 1303 aaKnown RBP21.07■□□□□ 0.96
LSM1-201ENST00000311351 NCBP3Q53F19 620 aaKnown RBP21.07■□□□□ 0.96
LSM1-201ENST00000311351 RNF123Q5XPI4 1314 aa21.06■□□□□ 0.96
LSM1-201ENST00000311351 FANCIQ9NVI1 1328 aa21.06■□□□□ 0.96
LSM1-201ENST00000311351 SNED1Q8TER0 1413 aa21.06■□□□□ 0.96
LSM1-201ENST00000311351 ATP5J2-PTCD1G3V325 749 aa21.06■□□□□ 0.96
LSM1-201ENST00000311351 ALDH1B1P30837 517 aa21.06■□□□□ 0.96
LSM1-201ENST00000311351 TRMT112Q9UI30 125 aaKnown RBP21.06■□□□□ 0.96
LSM1-201ENST00000311351 KDM2BQ8NHM5 1336 aa21.05■□□□□ 0.96
LSM1-201ENST00000311351 TAF1P21675 1872 aa21.05■□□□□ 0.96
LSM1-201ENST00000311351 TCERG1O14776 1098 aaKnown RBP21.05■□□□□ 0.96
LSM1-201ENST00000311351 HCLS1P14317 486 aaPredicted RBP21.05■□□□□ 0.96
LSM1-201ENST00000311351 HOXA10P31260 410 aaPredicted RBP21.05■□□□□ 0.96
LSM1-201ENST00000311351 GOLGA2Q08379 1002 aa21.05■□□□□ 0.96
LSM1-201ENST00000311351 CCDC30Q5VVM6 783 aa21.05■□□□□ 0.96
LSM1-201ENST00000311351 ISCA1Q9BUE6 129 aa21.05■□□□□ 0.96
LSM1-201ENST00000311351 SH3TC1Q8TE82 1336 aa21.04■□□□□ 0.96
LSM1-201ENST00000311351 TWISTNBQ3B726 338 aaPredicted RBP21.04■□□□□ 0.96
LSM1-201ENST00000311351 SLC10A5Q5PT55 438 aa21.04■□□□□ 0.96
LSM1-201ENST00000311351 NLRP3Q96P20 1036 aa21.04■□□□□ 0.96
LSM1-201ENST00000311351 FKBP4Q02790 459 aaKnown RBP eCLIP21.03■□□□□ 0.96
LSM1-201ENST00000311351 RIC3Q7Z5B4 369 aa21.03■□□□□ 0.96
LSM1-201ENST00000311351 RBM17Q96I25 401 aaKnown RBP21.03■□□□□ 0.96
LSM1-201ENST00000311351 WDR63Q8IWG1 891 aa21.02■□□□□ 0.96
LSM1-201ENST00000311351 CRAMP1Q96RY5 1269 aa21.02■□□□□ 0.96
LSM1-201ENST00000311351 ZNF277Q9NRM2 450 aaPredicted RBP21.02■□□□□ 0.96
LSM1-201ENST00000311351 ABCC4O15439 1325 aa21.02■□□□□ 0.95
LSM1-201ENST00000311351 GLTPD2A6NH11 291 aa21.01■□□□□ 0.95
LSM1-201ENST00000311351 PPEF1O14829 653 aaPredicted RBP21.01■□□□□ 0.95
LSM1-201ENST00000311351 FAM89AQ96GI7 184 aa21.01■□□□□ 0.95
LSM1-201ENST00000311351 RRAGCQ9HB90 399 aa21.01■□□□□ 0.95
LSM1-201ENST00000311351 SPINK5Q9NQ38 1064 aaPredicted RBP21.01■□□□□ 0.95
LSM1-201ENST00000311351 WDR90Q96KV7 1748 aa21.01■□□□□ 0.95
LSM1-201ENST00000311351 RTL5Q5HYW3 569 aaPredicted RBP21■□□□□ 0.95
LSM1-201ENST00000311351 RTKN2Q8IZC4 609 aa21■□□□□ 0.95
LSM1-201ENST00000311351 MYD88Q99836 296 aa21■□□□□ 0.95
LSM1-201ENST00000311351 COL4A1P02462 1669 aa20.99■□□□□ 0.95
LSM1-201ENST00000311351 STK31Q9BXU1 1019 aa20.99■□□□□ 0.95
LSM1-201ENST00000311351 COL4A5P29400 1685 aa20.99■□□□□ 0.95
LSM1-201ENST00000311351 CACNA1FO60840 1977 aa20.98■□□□□ 0.95
LSM1-201ENST00000311351 EXOSC9Q06265 439 aaKnown RBP20.98■□□□□ 0.95
LSM1-201ENST00000311351 G2E3Q7L622 706 aa20.98■□□□□ 0.95
LSM1-201ENST00000311351 CHMP4AQ9BY43 222 aa20.98■□□□□ 0.95
LSM1-201ENST00000311351 TOMM70O94826 608 aa20.97■□□□□ 0.95
LSM1-201ENST00000311351 DDX58O95786 925 aaKnown RBP20.97■□□□□ 0.95
LSM1-201ENST00000311351 TRIM28Q13263 835 aaKnown RBP20.97■□□□□ 0.95
LSM1-201ENST00000311351 MAP3K2Q9Y2U5 619 aa20.97■□□□□ 0.95
LSM1-201ENST00000311351 LRRC37AA6NMS7 1700 aa20.97■□□□□ 0.95
LSM1-201ENST00000311351 CC2D2BQ6DHV5 1058 aa20.96■□□□□ 0.95
LSM1-201ENST00000311351 C16orf71Q8IYS4 520 aaPredicted RBP20.96■□□□□ 0.95
LSM1-201ENST00000311351 PSMD1Q99460 953 aa20.96■□□□□ 0.95
LSM1-201ENST00000311351 METTL22Q9BUU2 404 aaPredicted RBP20.96■□□□□ 0.95
LSM1-201ENST00000311351 PI4KAP2A4QPH2 592 aa20.95■□□□□ 0.94
LSM1-201ENST00000311351 IARSP41252 1262 aaKnown RBP20.95■□□□□ 0.94
LSM1-201ENST00000311351 PI4KAP1Q8N8J0 262 aa20.95■□□□□ 0.94
LSM1-201ENST00000311351 ZNF541Q9H0D2 1346 aa20.95■□□□□ 0.94
LSM1-201ENST00000311351 IRS4O14654 1257 aaPredicted RBP20.94■□□□□ 0.94
LSM1-201ENST00000311351 DDNO94850 711 aaPredicted RBP20.94■□□□□ 0.94
LSM1-201ENST00000311351 SLC4A2P04920 1241 aa20.94■□□□□ 0.94
LSM1-201ENST00000311351 GRAPQ13588 217 aa20.94■□□□□ 0.94
LSM1-201ENST00000311351 DPY19L2Q6NUT2 758 aa20.94■□□□□ 0.94
LSM1-201ENST00000311351 DDX46Q7L014 1031 aaKnown RBP20.94■□□□□ 0.94
LSM1-201ENST00000311351 GRAPLQ8TC17 118 aaPredicted RBP20.94■□□□□ 0.94
LSM1-201ENST00000311351 JARID2Q92833 1246 aaPredicted RBP20.94■□□□□ 0.94
LSM1-201ENST00000311351 ZNF521Q96K83 1311 aa20.94■□□□□ 0.94
LSM1-201ENST00000311351 CEP350Q5VT06 3117 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 POTECB2RU33 542 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 VAMP4O75379 141 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 HSPA6P17066 643 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 KSR2Q6VAB6 950 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 ZBTB38Q8NAP3 1195 aaPredicted RBP20.93■□□□□ 0.94
LSM1-201ENST00000311351 CCDC191Q8NCU4 936 aa20.93■□□□□ 0.94
LSM1-201ENST00000311351 RBM46Q8TBY0 533 aaKnown RBP20.93■□□□□ 0.94
LSM1-201ENST00000311351 CWC25Q9NXE8 425 aaPredicted RBP20.93■□□□□ 0.94
LSM1-201ENST00000311351 ATP6V0A2Q9Y487 856 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms