RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FOXN1O15353 648 aa19.54■□□□□ 0.72
CCDC88B-201ENST00000301897 VEGFBP49765 207 aa19.54■□□□□ 0.72
CCDC88B-201ENST00000301897 CNTROBQ8N137 903 aa19.54■□□□□ 0.72
CCDC88B-201ENST00000301897 ABCC12Q96J65 1359 aa19.54■□□□□ 0.72
CCDC88B-201ENST00000301897 ERBB4Q15303 1308 aa19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 SNED1Q8TER0 1413 aa19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 LMOD1P29536 600 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 EIF4A1P60842 406 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 NUTM1Q86Y26 1132 aa19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 NGEFQ8N5V2 710 aa19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 RBM17Q96I25 401 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 RRP7AQ9Y3A4 280 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-201ENST00000301897 RASSF10A6NK89 507 aa19.52■□□□□ 0.72
CCDC88B-201ENST00000301897 CRAMP1Q96RY5 1269 aa19.52■□□□□ 0.72
CCDC88B-201ENST00000301897 TMX4Q9H1E5 349 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-201ENST00000301897 NFE2L2Q16236 605 aa19.51■□□□□ 0.71
CCDC88B-201ENST00000301897 DEFB115Q30KQ5 88 aa19.51■□□□□ 0.71
CCDC88B-201ENST00000301897 PPP1R42Q7Z4L9 355 aa19.51■□□□□ 0.71
CCDC88B-201ENST00000301897 PARP10Q53GL7 1025 aa19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 MAP1SQ66K74 1059 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 TTLL7Q6ZT98 887 aa19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 LARGE2Q8N3Y3 721 aa19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 WBP1LQ9NX94 342 aa19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 MAPK8IP3Q9UPT6 1336 aa19.5■□□□□ 0.71
CCDC88B-201ENST00000301897 MYL6BP14649 208 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 GPTP24298 496 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 MAP2K1Q02750 393 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 GIGYF2Q6Y7W6 1299 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 ZNF34Q8IZ26 560 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 PLEKHF1Q96S99 279 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 VPS33BQ9H267 617 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 ZBTB3Q9H5J0 574 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 GJA3Q9Y6H8 435 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 UBN2Q6ZU65 1347 aa19.49■□□□□ 0.71
CCDC88B-201ENST00000301897 PPEF1O14829 653 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-201ENST00000301897 SUSD4Q5VX71 490 aa19.48■□□□□ 0.71
CCDC88B-201ENST00000301897 NTSR2O95665 410 aa19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 USP50Q70EL3 339 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 NIM1KQ8IY84 436 aa19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 NLRP3Q96P20 1036 aa19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 DDX21Q9NR30 783 aaKnown RBP eCLIP19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 ABT1Q9ULW3 272 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-201ENST00000301897 WDR33Q9C0J8 1336 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-201ENST00000301897 SUPT20HQ8NEM7 779 aa19.45■□□□□ 0.7
CCDC88B-201ENST00000301897 BABAM1Q9NWV8 329 aa19.45■□□□□ 0.7
CCDC88B-201ENST00000301897 COL4A5P29400 1685 aa19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 ECE1P42892 770 aa19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 SCNN1DP51172 638 aa19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 THUMPD2Q9BTF0 503 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 UTP14AQ9BVJ6 771 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 TSPYL4Q9UJ04 414 aa19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 ATP6V0A2Q9Y487 856 aa19.44■□□□□ 0.7
CCDC88B-201ENST00000301897 TRPM7Q96QT4 1865 aa19.43■□□□□ 0.7
CCDC88B-201ENST00000301897 PPIP5K2O43314 1243 aa19.43■□□□□ 0.7
CCDC88B-201ENST00000301897 EPS15P42566 896 aa19.43■□□□□ 0.7
CCDC88B-201ENST00000301897 LBX1P52954 281 aa19.43■□□□□ 0.7
CCDC88B-201ENST00000301897 SLC10A5Q5PT55 438 aa19.43■□□□□ 0.7
CCDC88B-201ENST00000301897 LTBP1Q14766 1721 aa19.42■□□□□ 0.7
CCDC88B-201ENST00000301897 HSP90AB3PQ58FF7 597 aa19.42■□□□□ 0.7
CCDC88B-201ENST00000301897 BEGAINQ9BUH8 593 aa19.42■□□□□ 0.7
CCDC88B-201ENST00000301897 BBOX1O75936 387 aa19.41■□□□□ 0.7
CCDC88B-201ENST00000301897 LMOD3Q0VAK6 560 aa19.41■□□□□ 0.7
CCDC88B-201ENST00000301897 ADARB2Q9NS39 739 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-201ENST00000301897 TCERG1O14776 1098 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 HSPA8P11142 646 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 AOC3Q16853 763 aa19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 RTFDC1Q9BY42 306 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 GPRC5DQ9NZD1 345 aa19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 ZNRF3Q9ULT6 936 aa19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 CDHR2Q9BYE9 1310 aa19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 THSD7BQ9C0I4 1608 aa19.4■□□□□ 0.7
CCDC88B-201ENST00000301897 EIF2S2P20042 333 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-201ENST00000301897 PDIA6Q15084 440 aa19.39■□□□□ 0.69
CCDC88B-201ENST00000301897 C3orf67Q6ZVT6 689 aa19.39■□□□□ 0.69
CCDC88B-201ENST00000301897 LRP10Q7Z4F1 713 aa19.39■□□□□ 0.69
CCDC88B-201ENST00000301897 CAPNS2Q96L46 248 aa19.39■□□□□ 0.69
CCDC88B-201ENST00000301897 ABCC4O15439 1325 aa19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 RIPK4P57078 832 aa19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 ANKRD36CQ5JPF3 1778 aa19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 DPP8Q6V1X1 898 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 PAXIP1Q6ZW49 1069 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 TMC4Q7Z404 712 aa19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 SP8Q8IXZ3 490 aa19.38■□□□□ 0.69
CCDC88B-201ENST00000301897 TNIP1Q15025 636 aa19.37■□□□□ 0.69
CCDC88B-201ENST00000301897 DDX46Q7L014 1031 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-201ENST00000301897 MPNDQ8N594 471 aa19.37■□□□□ 0.69
CCDC88B-201ENST00000301897 GPR101Q96P66 508 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-201ENST00000301897 TLL2Q9Y6L7 1015 aa19.37■□□□□ 0.69
CCDC88B-201ENST00000301897 MAP2K2P36507 400 aa19.36■□□□□ 0.69
CCDC88B-201ENST00000301897 CXCL9Q07325 125 aa19.36■□□□□ 0.69
CCDC88B-201ENST00000301897 ZC3H15Q8WU90 426 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-201ENST00000301897 KIAA2012Q0VF49 1180 aa19.35■□□□□ 0.69
CCDC88B-201ENST00000301897 CST9Q5W186 159 aa19.35■□□□□ 0.69
CCDC88B-201ENST00000301897 CIAPIN1Q6FI81 312 aa19.35■□□□□ 0.69
CCDC88B-201ENST00000301897 NLRP10Q86W26 655 aa19.35■□□□□ 0.69
CCDC88B-201ENST00000301897 TRMT112Q9UI30 125 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-201ENST00000301897 LAMB2P55268 1798 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 SH3TC1Q8TE82 1336 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 TRAF5O00463 557 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 CA12O43570 354 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms