RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 OVOS2A0A0J9YW53 1432 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 OVOS2Q6IE36 1432 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 COL9A3Q14050 684 aaPredicted RBP17.42■□□□□ 0.38
CCNF-201ENST00000293968 FUCA2Q9BTY2 467 aa17.42■□□□□ 0.38
CCNF-201ENST00000293968 BECN2A8MW95 431 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 NPHP1O15259 732 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 EPB41L2O43491 1005 aaKnown RBP17.41■□□□□ 0.38
CCNF-201ENST00000293968 ZNF771Q7L3S4 317 aaPredicted RBP17.41■□□□□ 0.38
CCNF-201ENST00000293968 KLHDC4Q8TBB5 520 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 LRRC2Q9BYS8 371 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 ZNF530Q6P9A1 599 aaPredicted RBP17.41■□□□□ 0.38
CCNF-201ENST00000293968 FILIP1Q7Z7B0 1213 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 SLC27A2O14975 620 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 CCDC112Q8NEF3 446 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 SCAND2PQ9GZW5 306 aaPredicted RBP17.41■□□□□ 0.38
CCNF-201ENST00000293968 TCHHQ07283 1943 aa17.41■□□□□ 0.38
CCNF-201ENST00000293968 CEBPAP49715 358 aaPredicted RBP17.4■□□□□ 0.38
CCNF-201ENST00000293968 LTKP29376 864 aa17.4■□□□□ 0.38
CCNF-201ENST00000293968 EDC3Q96F86 508 aaKnown RBP17.4■□□□□ 0.38
CCNF-201ENST00000293968 TTC21AQ8NDW8 1320 aa17.4■□□□□ 0.38
CCNF-201ENST00000293968 ERC1Q8IUD2 1116 aa17.4■□□□□ 0.38
CCNF-201ENST00000293968 NDUFB9Q9Y6M9 179 aa17.4■□□□□ 0.38
CCNF-201ENST00000293968 JAK2O60674 1132 aa17.4■□□□□ 0.38
CCNF-201ENST00000293968 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCNF-201ENST00000293968 V9GYY5 206 aaPredicted RBP17.4■□□□□ 0.38
CCNF-201ENST00000293968 NR1I2O75469 434 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 DMTNQ08495 405 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 ST3GAL1Q11201 340 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 RBM33Q96EV2 1170 aaKnown RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 DNAJC2Q99543 621 aaKnown RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 A0A0D9SFI3 127 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 NAA30Q147X3 362 aaPredicted RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 A0A087WWV3 80 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 EIF4A1P60842 406 aaKnown RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 SIRT1Q96EB6 747 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 TRMT1Q9NXH9 659 aaKnown RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 TLR7Q9NYK1 1049 aaKnown RBP17.39■□□□□ 0.37
CCNF-201ENST00000293968 TAF6LQ9Y6J9 622 aa17.39■□□□□ 0.37
CCNF-201ENST00000293968 CEP170BQ9Y4F5 1589 aaPredicted RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 A0A0U1RQG5 324 aaPredicted RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 ZSCAN20P17040 1043 aaPredicted RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 GTF2F1P35269 517 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCNF-201ENST00000293968 LEO1Q8WVC0 666 aaPredicted RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 ANKRD1Q15327 319 aa17.38■□□□□ 0.37
CCNF-201ENST00000293968 DDX19AQ9NUU7 478 aaKnown RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 RIMS1Q86UR5 1692 aaKnown RBP17.38■□□□□ 0.37
CCNF-201ENST00000293968 ZNF75DP51815 510 aa17.37■□□□□ 0.37
CCNF-201ENST00000293968 NECTIN1Q15223 517 aa17.37■□□□□ 0.37
CCNF-201ENST00000293968 PROSER3Q2NL68 480 aa17.37■□□□□ 0.37
CCNF-201ENST00000293968 ZRSR1Q15695 479 aaKnown RBP17.37■□□□□ 0.37
CCNF-201ENST00000293968 BRF1Q92994 677 aa17.37■□□□□ 0.37
CCNF-201ENST00000293968 EAF2Q96CJ1 260 aaPredicted RBP17.37■□□□□ 0.37
CCNF-201ENST00000293968 C1orf141Q5JVX7 400 aa17.37■□□□□ 0.37
CCNF-201ENST00000293968 LRRC59Q96AG4 307 aaKnown RBP17.37■□□□□ 0.37
CCNF-201ENST00000293968 HIP1O00291 1037 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 ZSCAN25Q6NSZ9 544 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 TM6SF1Q9BZW5 370 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 RIC3Q7Z5B4 369 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 DBF4Q9UBU7 674 aaPredicted RBP17.36■□□□□ 0.37
CCNF-201ENST00000293968 MYL6BP14649 208 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 GUCY1B3Q02153 619 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 USP31Q70CQ4 1352 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 TNRQ92752 1358 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 NPHP3Q7Z494 1330 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 PRAMEF22A3QJZ6 481 aa17.36■□□□□ 0.37
CCNF-201ENST00000293968 BICC1Q9H694 974 aaKnown RBP17.36■□□□□ 0.37
CCNF-201ENST00000293968 ERCC4Q92889 916 aaPredicted RBP17.35■□□□□ 0.37
CCNF-201ENST00000293968 RPS6KB1P23443 525 aa17.35■□□□□ 0.37
CCNF-201ENST00000293968 IL17RAQ96F46 866 aa17.35■□□□□ 0.37
CCNF-201ENST00000293968 CLSTN2Q9H4D0 955 aa17.35■□□□□ 0.37
CCNF-201ENST00000293968 KDRP35968 1356 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 ARID5BQ14865 1188 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 CCDC129Q6ZRS4 1044 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 CHMP4AQ9BY43 222 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 ZNF589Q86UQ0 364 aaPredicted RBP17.34■□□□□ 0.37
CCNF-201ENST00000293968 MAP4K1Q92918 833 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 SUCLG2Q96I99 432 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 HDAC5Q9UQL6 1122 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 NBPF6Q5VWK0 638 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 CACTINQ8WUQ7 758 aaKnown RBP17.34■□□□□ 0.37
CCNF-201ENST00000293968 NBPF4Q96M43 638 aa17.34■□□□□ 0.37
CCNF-201ENST00000293968 CCDC73Q6ZRK6 1079 aa17.33■□□□□ 0.37
CCNF-201ENST00000293968 FMNL2Q96PY5 1086 aa17.33■□□□□ 0.37
CCNF-201ENST00000293968 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.33■□□□□ 0.37
CCNF-201ENST00000293968 TMEM2Q9UHN6 1383 aa17.33■□□□□ 0.37
CCNF-201ENST00000293968 CEP135Q66GS9 1140 aa17.33■□□□□ 0.36
CCNF-201ENST00000293968 CCT2P78371 535 aaKnown RBP17.32■□□□□ 0.36
CCNF-201ENST00000293968 Q6ZUG5 572 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 FTOQ9C0B1 505 aaKnown RBP eCLIP17.32■□□□□ 0.36
CCNF-201ENST00000293968 USP16Q9Y5T5 823 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 NCBP1Q09161 790 aaKnown RBP17.32■□□□□ 0.36
CCNF-201ENST00000293968 SMTNL1A8MU46 457 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 GRM8O00222 908 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 ME1P48163 572 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 KINO60870 393 aaKnown RBP17.32■□□□□ 0.36
CCNF-201ENST00000293968 CCDC144BQ3MJ40 725 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 KSR2Q6VAB6 950 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 CCAR1Q8IX12 1150 aaKnown RBP17.32■□□□□ 0.36
CCNF-201ENST00000293968 CCDC144CPQ8IYA2 1237 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 PGBD1Q96JS3 809 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms