RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ADCY9O60503 1353 aa17.13■□□□□ 0.33
VPS28-201ENST00000292510 IBTKQ9P2D0 1353 aaPredicted RBP17.13■□□□□ 0.33
VPS28-201ENST00000292510 COL11A2P13942 1736 aaPredicted RBP17.13■□□□□ 0.33
VPS28-201ENST00000292510 KSR2Q6VAB6 950 aa17.12■□□□□ 0.33
VPS28-201ENST00000292510 BRCA1P38398 1863 aaKnown RBP17.12■□□□□ 0.33
VPS28-201ENST00000292510 TNRC6CQ9HCJ0 1690 aaKnown RBP17.11■□□□□ 0.33
VPS28-201ENST00000292510 FKBP5Q13451 457 aaPredicted RBP17.11■□□□□ 0.33
VPS28-201ENST00000292510 DALRD3Q5D0E6 543 aaKnown RBP17.11■□□□□ 0.33
VPS28-201ENST00000292510 ZNF622Q969S3 477 aaKnown RBP eCLIP17.11■□□□□ 0.332e-11■■■■■ 40.7
VPS28-201ENST00000292510 METTL22Q9BUU2 404 aaPredicted RBP17.11■□□□□ 0.33
VPS28-201ENST00000292510 TRMT112Q9UI30 125 aaKnown RBP17.11■□□□□ 0.33
VPS28-201ENST00000292510 SRGNP10124 158 aa17.1■□□□□ 0.33
VPS28-201ENST00000292510 KLRG2A4D1S0 409 aaPredicted RBP17.09■□□□□ 0.33
VPS28-201ENST00000292510 GRIN3BO60391 1043 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 C3orf67Q6ZVT6 689 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 TTLL6Q8N841 843 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 SSH1Q8WYL5 1049 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 BCL2L13Q9BXK5 485 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 DLEC1Q9Y238 1755 aa17.09■□□□□ 0.33
VPS28-201ENST00000292510 ZBED9Q6R2W3 1325 aa17.08■□□□□ 0.32
VPS28-201ENST00000292510 F6X3S4 739 aa17.08■□□□□ 0.32
VPS28-201ENST00000292510 IGKV5-2P06315 115 aa17.08■□□□□ 0.32
VPS28-201ENST00000292510 HCLS1P14317 486 aaPredicted RBP17.08■□□□□ 0.32
VPS28-201ENST00000292510 TRIM28Q13263 835 aaKnown RBP17.08■□□□□ 0.32
VPS28-201ENST00000292510 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
VPS28-201ENST00000292510 MRPL50Q8N5N7 158 aaKnown RBP17.08■□□□□ 0.32
VPS28-201ENST00000292510 FAM89AQ96GI7 184 aa17.08■□□□□ 0.32
VPS28-201ENST00000292510 PDZRN3Q9UPQ7 1066 aa17.08■□□□□ 0.32
VPS28-201ENST00000292510 SH3TC1Q8TE82 1336 aa17.07■□□□□ 0.32
VPS28-201ENST00000292510 CWF19L2Q2TBE0 894 aaKnown RBP17.07■□□□□ 0.32
VPS28-201ENST00000292510 DNAAF4Q8WXU2 420 aa17.07■□□□□ 0.32
VPS28-201ENST00000292510 JARID2Q92833 1246 aaPredicted RBP17.07■□□□□ 0.32
VPS28-201ENST00000292510 MASTLQ96GX5 879 aa17.07■□□□□ 0.32
VPS28-201ENST00000292510 RIC1Q4ADV7 1423 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 RNF123Q5XPI4 1314 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 NPR1P16066 1061 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 SLC10A5Q5PT55 438 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 STYK1Q6J9G0 422 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 CCDC191Q8NCU4 936 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 CWC25Q9NXE8 425 aaPredicted RBP17.06■□□□□ 0.32
VPS28-201ENST00000292510 ZNF219Q9P2Y4 722 aaPredicted RBP17.06■□□□□ 0.32
VPS28-201ENST00000292510 CACNA1FO60840 1977 aa17.06■□□□□ 0.32
VPS28-201ENST00000292510 NEXNQ0ZGT2 675 aa17.05■□□□□ 0.32
VPS28-201ENST00000292510 CRY2Q49AN0 593 aa17.05■□□□□ 0.32
VPS28-201ENST00000292510 ARHGAP27Q6ZUM4 889 aa17.05■□□□□ 0.32
VPS28-201ENST00000292510 NEURL1BA8MQ27 555 aa17.04■□□□□ 0.32
VPS28-201ENST00000292510 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
VPS28-201ENST00000292510 PRPF40BQ6NWY9 871 aaKnown RBP17.04■□□□□ 0.32
VPS28-201ENST00000292510 ZBTB38Q8NAP3 1195 aaPredicted RBP17.04■□□□□ 0.32
VPS28-201ENST00000292510 CNKSR1Q969H4 720 aa17.04■□□□□ 0.32
VPS28-201ENST00000292510 NLRP3Q96P20 1036 aa17.04■□□□□ 0.32
VPS28-201ENST00000292510 SMC4Q9NTJ3 1288 aa17.04■□□□□ 0.32
VPS28-201ENST00000292510 ARFGEF1Q9Y6D6 1849 aa17.03■□□□□ 0.32
VPS28-201ENST00000292510 IRS4O14654 1257 aaPredicted RBP17.03■□□□□ 0.32
VPS28-201ENST00000292510 C21orf2O43822 256 aa17.03■□□□□ 0.32
VPS28-201ENST00000292510 ALDH1L2Q3SY69 923 aa17.03■□□□□ 0.32
VPS28-201ENST00000292510 RPGRQ92834 1020 aaKnown RBP17.03■□□□□ 0.32
VPS28-201ENST00000292510 SLX4Q8IY92 1834 aa17.03■□□□□ 0.32
VPS28-201ENST00000292510 CACNA1SQ13698 1873 aa17.02■□□□□ 0.32
VPS28-201ENST00000292510 PCCAP05165 728 aaPredicted RBP17.02■□□□□ 0.32
VPS28-201ENST00000292510 RARSP54136 660 aaKnown RBP17.02■□□□□ 0.32
VPS28-201ENST00000292510 DDX60Q8IY21 1712 aaKnown RBP17.01■□□□□ 0.31
VPS28-201ENST00000292510 YY1P25490 414 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 BEND3Q5T5X7 828 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 SLC4A10Q6U841 1118 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 OLFM4Q6UX06 510 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 SLC51AQ86UW1 340 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 LINS1Q8NG48 757 aa17.01■□□□□ 0.31
VPS28-201ENST00000292510 ALDH1B1P30837 517 aa17■□□□□ 0.31
VPS28-201ENST00000292510 HOXA10P31260 410 aaPredicted RBP17■□□□□ 0.31
VPS28-201ENST00000292510 RASSF7Q02833 373 aa17■□□□□ 0.31
VPS28-201ENST00000292510 GCKRQ14397 625 aa17■□□□□ 0.31
VPS28-201ENST00000292510 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
VPS28-201ENST00000292510 LAMB2P55268 1798 aa17■□□□□ 0.31
VPS28-201ENST00000292510 PTPRCP08575 1304 aa16.99■□□□□ 0.31
VPS28-201ENST00000292510 UBE3BQ7Z3V4 1068 aa16.99■□□□□ 0.31
VPS28-201ENST00000292510 C7orf43Q8WVR3 580 aa16.99■□□□□ 0.31
VPS28-201ENST00000292510 CRAMP1Q96RY5 1269 aa16.99■□□□□ 0.31
VPS28-201ENST00000292510 ABCC4O15439 1325 aa16.98■□□□□ 0.31
VPS28-201ENST00000292510 CHD4Q14839 1912 aa16.98■□□□□ 0.31
VPS28-201ENST00000292510 H7C1W4 665 aa16.98■□□□□ 0.31
VPS28-201ENST00000292510 CCDC85AQ96PX6 553 aaPredicted RBP16.98■□□□□ 0.31
VPS28-201ENST00000292510 NOB1Q9ULX3 412 aaKnown RBP16.98■□□□□ 0.31
VPS28-201ENST00000292510 CDHR2Q9BYE9 1310 aa16.97■□□□□ 0.31
VPS28-201ENST00000292510 NFKBIEO00221 500 aa16.97■□□□□ 0.31
VPS28-201ENST00000292510 BCAR3O75815 825 aa16.97■□□□□ 0.31
VPS28-201ENST00000292510 PRELPP51888 382 aa16.97■□□□□ 0.31
VPS28-201ENST00000292510 SF3B3Q15393 1217 aaKnown RBP16.97■□□□□ 0.31
VPS28-201ENST00000292510 PPEF1O14829 653 aaPredicted RBP16.96■□□□□ 0.31
VPS28-201ENST00000292510 PDE8AO60658 829 aa16.96■□□□□ 0.31
VPS28-201ENST00000292510 BRPF1P55201 1214 aaPredicted RBP16.96■□□□□ 0.31
VPS28-201ENST00000292510 CASP7P55210 303 aa16.96■□□□□ 0.31
VPS28-201ENST00000292510 DDX46Q7L014 1031 aaKnown RBP16.96■□□□□ 0.31
VPS28-201ENST00000292510 SRCIN1Q9C0H9 1055 aa16.96■□□□□ 0.31
VPS28-201ENST00000292510 COL4A1P02462 1669 aa16.96■□□□□ 0.31
VPS28-201ENST00000292510 CCDC93Q567U6 631 aa16.95■□□□□ 0.3
VPS28-201ENST00000292510 CELF1Q92879 486 aaKnown RBP16.95■□□□□ 0.3
VPS28-201ENST00000292510 YTHDC1Q96MU7 727 aaKnown RBP16.95■□□□□ 0.3
VPS28-201ENST00000292510 SEC31BQ9NQW1 1179 aa16.95■□□□□ 0.3
VPS28-201ENST00000292510 ALDH1L1O75891 902 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms