RNA–Protein interactions for RNA: ENST00000290330.7

SNF8-201, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SNF8, Length 951 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-201ENST00000290330 ARFGEF2Q9Y6D5 1785 aa13.61□□□□□ -0.23
SNF8-201ENST00000290330 VEGFAP15692 232 aaPredicted RBP13.61□□□□□ -0.23
SNF8-201ENST00000290330 HOXA10P31260 410 aaPredicted RBP13.61□□□□□ -0.23
SNF8-201ENST00000290330 FKBP4Q02790 459 aaKnown RBP eCLIP13.61□□□□□ -0.23
SNF8-201ENST00000290330 CALD1Q05682 793 aaKnown RBP13.61□□□□□ -0.23
SNF8-201ENST00000290330 TCIRG1Q13488 830 aa13.61□□□□□ -0.23
SNF8-201ENST00000290330 HSP90AB3PQ58FF7 597 aa13.61□□□□□ -0.23
SNF8-201ENST00000290330 RTKN2Q8IZC4 609 aa13.61□□□□□ -0.23
SNF8-201ENST00000290330 UTP14AQ9BVJ6 771 aaKnown RBP13.61□□□□□ -0.23
SNF8-201ENST00000290330 IFT57Q9NWB7 429 aa13.61□□□□□ -0.23
SNF8-201ENST00000290330 DBF4Q9UBU7 674 aaPredicted RBP13.61□□□□□ -0.23
SNF8-201ENST00000290330 GNAI1P63096 354 aa13.6□□□□□ -0.23
SNF8-201ENST00000290330 FSTL1Q12841 308 aa13.6□□□□□ -0.23
SNF8-201ENST00000290330 SLC10A5Q5PT55 438 aa13.6□□□□□ -0.23
SNF8-201ENST00000290330 C3orf67Q6ZVT6 689 aa13.6□□□□□ -0.23
SNF8-201ENST00000290330 NLRP10Q86W26 655 aa13.6□□□□□ -0.23
SNF8-201ENST00000290330 RPGRQ92834 1020 aaKnown RBP13.6□□□□□ -0.23
SNF8-201ENST00000290330 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 CCDC88AQ3V6T2 1871 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 TIAM2Q8IVF5 1701 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 POTECB2RU33 542 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 CACNB1Q02641 598 aaPredicted RBP13.59□□□□□ -0.23
SNF8-201ENST00000290330 PLBD2Q8NHP8 589 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 NLRP3Q96P20 1036 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 CRAMP1Q96RY5 1269 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 ZNF277Q9NRM2 450 aaPredicted RBP13.59□□□□□ -0.23
SNF8-201ENST00000290330 RNF123Q5XPI4 1314 aa13.59□□□□□ -0.23
SNF8-201ENST00000290330 SNED1Q8TER0 1413 aa13.58□□□□□ -0.24
SNF8-201ENST00000290330 ELL2O00472 640 aaPredicted RBP13.58□□□□□ -0.24
SNF8-201ENST00000290330 DDNO94850 711 aaPredicted RBP13.58□□□□□ -0.24
SNF8-201ENST00000290330 APLP1P51693 650 aa13.58□□□□□ -0.24
SNF8-201ENST00000290330 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.24
SNF8-201ENST00000290330 ANKRD13DQ6ZTN6 518 aa13.58□□□□□ -0.24
SNF8-201ENST00000290330 RBM17Q96I25 401 aaKnown RBP13.58□□□□□ -0.24
SNF8-201ENST00000290330 HYPKQ9NX55 129 aa13.58□□□□□ -0.24
SNF8-201ENST00000290330 ANP32CO43423 234 aa13.57□□□□□ -0.24
SNF8-201ENST00000290330 SYNE4Q8N205 404 aa13.57□□□□□ -0.24
SNF8-201ENST00000290330 SMC1BQ8NDV3 1235 aa13.57□□□□□ -0.24
SNF8-201ENST00000290330 PSMD1Q99460 953 aa13.57□□□□□ -0.24
SNF8-201ENST00000290330 TRMT112Q9UI30 125 aaKnown RBP13.57□□□□□ -0.24
SNF8-201ENST00000290330 DICER1Q9UPY3 1922 aaKnown RBP13.56□□□□□ -0.24
SNF8-201ENST00000290330 IARSP41252 1262 aaKnown RBP13.56□□□□□ -0.24
SNF8-201ENST00000290330 CCDC27Q2M243 656 aa13.56□□□□□ -0.24
SNF8-201ENST00000290330 DIEXFQ68CQ4 756 aaKnown RBP13.56□□□□□ -0.24
SNF8-201ENST00000290330 C8orf58Q8NAV2 365 aa13.56□□□□□ -0.24
SNF8-201ENST00000290330 MRS2Q9HD23 443 aa13.56□□□□□ -0.24
SNF8-201ENST00000290330 SH3TC1Q8TE82 1336 aa13.56□□□□□ -0.24
SNF8-201ENST00000290330 WDR90Q96KV7 1748 aa13.56□□□□□ -0.24
SNF8-201ENST00000290330 PPEF1O14829 653 aaPredicted RBP13.55□□□□□ -0.24
SNF8-201ENST00000290330 HCLS1P14317 486 aaPredicted RBP13.55□□□□□ -0.24
SNF8-201ENST00000290330 GRIPAP1Q4V328 841 aa13.55□□□□□ -0.24
SNF8-201ENST00000290330 SLC51AQ86UW1 340 aa13.55□□□□□ -0.24
SNF8-201ENST00000290330 WWC1Q8IX03 1113 aa13.55□□□□□ -0.24
SNF8-201ENST00000290330 ISCA1Q9BUE6 129 aa13.55□□□□□ -0.24
SNF8-201ENST00000290330 PHAXQ9H814 394 aaKnown RBP13.55□□□□□ -0.24
SNF8-201ENST00000290330 ATP5J2-PTCD1G3V325 749 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 FZD9O00144 591 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
SNF8-201ENST00000290330 DNAJC5GQ8N7S2 189 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 ZNF428Q96B54 188 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 L3MBTL3Q96JM7 780 aaPredicted RBP13.54□□□□□ -0.24
SNF8-201ENST00000290330 ATP6V0A2Q9Y487 856 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 ABCC4O15439 1325 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 ZNF541Q9H0D2 1346 aa13.54□□□□□ -0.24
SNF8-201ENST00000290330 ANKRD36CQ5JPF3 1778 aa13.53□□□□□ -0.24
SNF8-201ENST00000290330 BBOX1O75936 387 aa13.53□□□□□ -0.24
SNF8-201ENST00000290330 TRIM28Q13263 835 aaKnown RBP13.53□□□□□ -0.24
SNF8-201ENST00000290330 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
SNF8-201ENST00000290330 TSPYL6Q8N831 410 aa13.53□□□□□ -0.24
SNF8-201ENST00000290330 FAM89AQ96GI7 184 aa13.53□□□□□ -0.24
SNF8-201ENST00000290330 CEP350Q5VT06 3117 aa13.53□□□□□ -0.24
SNF8-201ENST00000290330 HTRA3P83110 453 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 GOLGA2Q08379 1002 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 CCDC30Q5VVM6 783 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 RIC3Q7Z5B4 369 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 JDP2Q8WYK2 163 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 TSR2Q969E8 191 aaKnown RBP13.52□□□□□ -0.25
SNF8-201ENST00000290330 CHMP4AQ9BY43 222 aa13.52□□□□□ -0.25
SNF8-201ENST00000290330 IQCA1LA6NCM1 817 aa13.51□□□□□ -0.25
SNF8-201ENST00000290330 GRAPQ13588 217 aa13.51□□□□□ -0.25
SNF8-201ENST00000290330 DDX46Q7L014 1031 aaKnown RBP13.51□□□□□ -0.25
SNF8-201ENST00000290330 SP8Q8IXZ3 490 aa13.51□□□□□ -0.25
SNF8-201ENST00000290330 GRAPLQ8TC17 118 aaPredicted RBP13.51□□□□□ -0.25
SNF8-201ENST00000290330 TMX4Q9H1E5 349 aaPredicted RBP13.51□□□□□ -0.25
SNF8-201ENST00000290330 IL16Q14005 1332 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 POTEIP0CG38 1075 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 POTEJP0CG39 1038 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 SF3B3Q15393 1217 aaKnown RBP13.5□□□□□ -0.25
SNF8-201ENST00000290330 RTL5Q5HYW3 569 aaPredicted RBP13.5□□□□□ -0.25
SNF8-201ENST00000290330 GPC2Q8N158 579 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 LARGE2Q8N3Y3 721 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 TAF1DQ9H5J8 278 aaPredicted RBP13.5□□□□□ -0.25
SNF8-201ENST00000290330 COL4A5P29400 1685 aa13.5□□□□□ -0.25
SNF8-201ENST00000290330 EIF6P56537 245 aaKnown RBP13.49□□□□□ -0.25
SNF8-201ENST00000290330 CHADLQ6NUI6 762 aa13.49□□□□□ -0.25
SNF8-201ENST00000290330 ZBTB38Q8NAP3 1195 aaPredicted RBP13.49□□□□□ -0.25
SNF8-201ENST00000290330 MYD88Q99836 296 aa13.49□□□□□ -0.25
SNF8-201ENST00000290330 RTFDC1Q9BY42 306 aaPredicted RBP13.49□□□□□ -0.25
SNF8-201ENST00000290330 VPS33BQ9H267 617 aa13.49□□□□□ -0.25
SNF8-201ENST00000290330 IRS4O14654 1257 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms