RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 CARMIL3Q8ND23 1372 aa11.92□□□□□ -0.5
HMGN1-201ENST00000288344 ATP10DQ9P241 1426 aa11.92□□□□□ -0.5
HMGN1-201ENST00000288344 MYL6BP14649 208 aa11.91□□□□□ -0.5
HMGN1-201ENST00000288344 GIGYF2Q6Y7W6 1299 aaKnown RBP11.91□□□□□ -0.5
HMGN1-201ENST00000288344 COPS6Q7L5N1 327 aa11.91□□□□□ -0.5
HMGN1-201ENST00000288344 TSR2Q969E8 191 aaKnown RBP11.91□□□□□ -0.5
HMGN1-201ENST00000288344 CHPF2Q9P2E5 772 aa11.91□□□□□ -0.5
HMGN1-201ENST00000288344 UBN2Q6ZU65 1347 aa11.91□□□□□ -0.5
HMGN1-201ENST00000288344 VAMP4O75379 141 aa11.9□□□□□ -0.5
HMGN1-201ENST00000288344 SETDB2Q96T68 719 aa11.9□□□□□ -0.5
HMGN1-201ENST00000288344 BRIP1Q9BX63 1249 aa11.9□□□□□ -0.5
HMGN1-201ENST00000288344 DBF4Q9UBU7 674 aaPredicted RBP11.9□□□□□ -0.5
HMGN1-201ENST00000288344 ELL2O00472 640 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-201ENST00000288344 HDGFL1Q5TGJ6 251 aa11.89□□□□□ -0.51
HMGN1-201ENST00000288344 BICDL1Q6ZP65 573 aa11.89□□□□□ -0.51
HMGN1-201ENST00000288344 XAGE3Q8WTP9 111 aa11.89□□□□□ -0.51
HMGN1-201ENST00000288344 NECTIN2Q92692 538 aa11.89□□□□□ -0.51
HMGN1-201ENST00000288344 ZNF330Q9Y3S2 320 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-201ENST00000288344 FANCIQ9NVI1 1328 aa11.89□□□□□ -0.51
HMGN1-201ENST00000288344 CHRNA5P30532 468 aa11.88□□□□□ -0.51
HMGN1-201ENST00000288344 TRIM28Q13263 835 aaKnown RBP11.88□□□□□ -0.51
HMGN1-201ENST00000288344 SUSD4Q5VX71 490 aa11.88□□□□□ -0.51
HMGN1-201ENST00000288344 SALL2Q9Y467 1007 aaPredicted RBP11.88□□□□□ -0.51
HMGN1-201ENST00000288344 DLEC1Q9Y238 1755 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 GALR2O43603 387 aaPredicted RBP11.87□□□□□ -0.51
HMGN1-201ENST00000288344 TCIRG1Q13488 830 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 SLC10A5Q5PT55 438 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 CCDC24Q8N4L8 307 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 KIF12Q96FN5 646 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 ISCA1Q9BUE6 129 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 ZBTB3Q9H5J0 574 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 PHAXQ9H814 394 aaKnown RBP11.87□□□□□ -0.51
HMGN1-201ENST00000288344 HYPKQ9NX55 129 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 NIP7Q9Y221 180 aaKnown RBP eCLIP11.87□□□□□ -0.51
HMGN1-201ENST00000288344 ZNF652Q9Y2D9 606 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 CHD4Q14839 1912 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 IBTKQ9P2D0 1353 aaPredicted RBP11.87□□□□□ -0.51
HMGN1-201ENST00000288344 ARFGEF1Q9Y6D6 1849 aa11.87□□□□□ -0.51
HMGN1-201ENST00000288344 NTSR2O95665 410 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 SRGNP10124 158 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 EXOSC9Q06265 439 aaKnown RBP11.86□□□□□ -0.51
HMGN1-201ENST00000288344 SLFN5Q08AF3 891 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 ANKRD13DQ6ZTN6 518 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 PLBD2Q8NHP8 589 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 C7orf43Q8WVR3 580 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 CACNA1FO60840 1977 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 RIC1Q4ADV7 1423 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 GRIN3BO60391 1043 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 GPR162Q16538 588 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 TWISTNBQ3B726 338 aaPredicted RBP11.86□□□□□ -0.51
HMGN1-201ENST00000288344 CRY2Q49AN0 593 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 TPTE2Q6XPS3 522 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 G2E3Q7L622 706 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 NLRP10Q86W26 655 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 MS4A3Q96HJ5 214 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 DCBLD2Q96PD2 775 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 PIM2Q9P1W9 311 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 STK24Q9Y6E0 443 aa11.86□□□□□ -0.51
HMGN1-201ENST00000288344 COL11A2P13942 1736 aaPredicted RBP11.85□□□□□ -0.51
HMGN1-201ENST00000288344 GOLGA2Q08379 1002 aa11.85□□□□□ -0.51
HMGN1-201ENST00000288344 CCDC30Q5VVM6 783 aa11.85□□□□□ -0.51
HMGN1-201ENST00000288344 KIF6Q6ZMV9 814 aa11.85□□□□□ -0.51
HMGN1-201ENST00000288344 NPM2Q86SE8 214 aaKnown RBP11.85□□□□□ -0.51
HMGN1-201ENST00000288344 CDCA7LQ96GN5 454 aa11.85□□□□□ -0.51
HMGN1-201ENST00000288344 PDZRN3Q9UPQ7 1066 aa11.85□□□□□ -0.51
HMGN1-201ENST00000288344 ABCC12Q96J65 1359 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 ANKRD36CQ5JPF3 1778 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 MAP3K13O43283 966 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 HOXA10P31260 410 aaPredicted RBP11.84□□□□□ -0.51
HMGN1-201ENST00000288344 PDE6BP35913 854 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 PRELPP51888 382 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 AIMP1Q12904 312 aaKnown RBP11.84□□□□□ -0.51
HMGN1-201ENST00000288344 ERFEQ4G0M1 354 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 C3orf67Q6ZVT6 689 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 NBPF5PQ86XG9 351 aaPredicted RBP11.84□□□□□ -0.51
HMGN1-201ENST00000288344 SYNE4Q8N205 404 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 CNBD1Q8NA66 436 aa11.84□□□□□ -0.51
HMGN1-201ENST00000288344 SLX4Q8IY92 1834 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 SNED1Q8TER0 1413 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 PRKCSHP14314 528 aaPredicted RBP11.83□□□□□ -0.52
HMGN1-201ENST00000288344 GPTP24298 496 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 PARP10Q53GL7 1025 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 NUTM1Q86Y26 1132 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 C2CD5Q86YS7 1000 aa11.83□□□□□ -0.52
HMGN1-201ENST00000288344 ADCY9O60503 1353 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 SBF1O95248 1867 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 H0YIN7 160 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 IGKV5-2P06315 115 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 HSP90AB3PQ58FF7 597 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 DALRD3Q5D0E6 543 aaKnown RBP11.82□□□□□ -0.52
HMGN1-201ENST00000288344 STYK1Q6J9G0 422 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 TTLL6Q8N841 843 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 CHMP4AQ9BY43 222 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 WWC3Q9ULE0 1092 aa11.82□□□□□ -0.52
HMGN1-201ENST00000288344 TNRC6CQ9HCJ0 1690 aaKnown RBP11.81□□□□□ -0.52
HMGN1-201ENST00000288344 ARFGEF2Q9Y6D5 1785 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 E9PSI1 815 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 TCERG1O14776 1098 aaKnown RBP11.81□□□□□ -0.52
HMGN1-201ENST00000288344 KSR2Q6VAB6 950 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 MASTLQ96GX5 879 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms