RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 ECHDC1Q9NTX5 307 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 PTPRCP08575 1304 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 TMCO5BA8MYB1 307 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 SCAND2PQ9GZW5 306 aaPredicted RBP13.71□□□□□ -0.21
SHPRH-201ENST00000275233 MYO1BO43795 1136 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 UBE4AQ14139 1066 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 VTI1AQ96AJ9 217 aa13.71□□□□□ -0.21
SHPRH-201ENST00000275233 FGFR1OPO95684 399 aaKnown RBP13.71□□□□□ -0.22
SHPRH-201ENST00000275233 RBM26Q5T8P6 1007 aaKnown RBP13.71□□□□□ -0.22
SHPRH-201ENST00000275233 PLCD3Q8N3E9 789 aa13.71□□□□□ -0.22
SHPRH-201ENST00000275233 CABLES1Q8TDN4 633 aa13.71□□□□□ -0.22
SHPRH-201ENST00000275233 CRACR2AQ9BSW2 395 aa13.71□□□□□ -0.22
SHPRH-201ENST00000275233 GOLGA6L10A0A0M3HER8 536 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 IFFO1Q0D2I5 559 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 TCP11L1Q9NUJ3 509 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 KAT6BQ8WYB5 2073 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 TSPY3P0CV98 308 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 TSPY8P0CW00 308 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 TBC1D9Q6ZT07 1266 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 KIF5BP33176 963 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 TMC6Q7Z403 805 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 NECAB1Q8N987 351 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 RBM27Q9P2N5 1060 aaKnown RBP13.7□□□□□ -0.22
SHPRH-201ENST00000275233 ORC3Q9UBD5 711 aaPredicted RBP13.7□□□□□ -0.22
SHPRH-201ENST00000275233 SNRPA1P09661 255 aaKnown RBP13.7□□□□□ -0.22
SHPRH-201ENST00000275233 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 NEK1Q96PY6 1258 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 CYP7A1P22680 504 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 SETDB2Q96T68 719 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 USP25Q9UHP3 1055 aa13.7□□□□□ -0.22
SHPRH-201ENST00000275233 HMGB2P26583 209 aaKnown RBP13.69□□□□□ -0.22
SHPRH-201ENST00000275233 HSP90AA4PQ58FG1 418 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 COMMD10Q9Y6G5 202 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 ANKRD13DQ6ZTN6 518 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 CCDC91Q7Z6B0 441 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 DNMBPQ6XZF7 1577 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 NOP2P46087 812 aaKnown RBP13.69□□□□□ -0.22
SHPRH-201ENST00000275233 JAG2Q9Y219 1238 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 LDHCP07864 332 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 TCEANC2Q96MN5 208 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 CRNKL1Q9BZJ0 848 aaKnown RBP13.69□□□□□ -0.22
SHPRH-201ENST00000275233 PLS1Q14651 629 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 NCOA7Q8NI08 942 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 SLC4A4Q9Y6R1 1079 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 ABCC11Q96J66 1382 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 ZSCAN12O43309 604 aa13.69□□□□□ -0.22
SHPRH-201ENST00000275233 UBAP1LF5GYI3 381 aa13.68□□□□□ -0.22
SHPRH-201ENST00000275233 HEATR3Q7Z4Q2 680 aa13.68□□□□□ -0.22
SHPRH-201ENST00000275233 XAGE3Q8WTP9 111 aa13.68□□□□□ -0.22
SHPRH-201ENST00000275233 TEX13AQ9BXU3 409 aaPredicted RBP13.68□□□□□ -0.22
SHPRH-201ENST00000275233 ZCRB1Q8TBF4 217 aaKnown RBP13.68□□□□□ -0.22
SHPRH-201ENST00000275233 YEATS4O95619 227 aa13.68□□□□□ -0.22
SHPRH-201ENST00000275233 AFMP43652 599 aa13.68□□□□□ -0.22
SHPRH-201ENST00000275233 MAPK8IP2Q13387 824 aaPredicted RBP13.68□□□□□ -0.22
SHPRH-201ENST00000275233 TNPO1Q92973 898 aaKnown RBP13.68□□□□□ -0.22
SHPRH-201ENST00000275233 ESPNB1AK53 854 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 TMCO3Q6UWJ1 677 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 CCDC12Q8WUD4 166 aaPredicted RBP13.67□□□□□ -0.22
SHPRH-201ENST00000275233 PIK3R4Q99570 1358 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 UBA7P41226 1012 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 TTC21BQ7Z4L5 1316 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 RIMBP2O15034 1052 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 IFIT1BQ5T764 474 aaKnown RBP13.67□□□□□ -0.22
SHPRH-201ENST00000275233 COPS6Q7L5N1 327 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 VEZTQ9HBM0 779 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 USO1O60763 962 aaKnown RBP13.67□□□□□ -0.22
SHPRH-201ENST00000275233 PRXQ9BXM0 1461 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 SBNO2Q9Y2G9 1366 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 STX6O43752 255 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 HOOK3Q86VS8 718 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 LRRC59Q96AG4 307 aaKnown RBP13.67□□□□□ -0.22
SHPRH-201ENST00000275233 WDR70Q9NW82 654 aa13.67□□□□□ -0.22
SHPRH-201ENST00000275233 NIP7Q9Y221 180 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHPRH-201ENST00000275233 KLF18A0A0U1RQI7 1052 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 AMPD3Q01432 767 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 WTAPQ15007 396 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 C16orf45Q96MC5 204 aaPredicted RBP13.66□□□□□ -0.22
SHPRH-201ENST00000275233 TBC1D2Q9BYX2 928 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 DISP3Q9P2K9 1392 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 HLTFQ14527 1009 aaKnown RBP eCLIP13.66□□□□□ -0.223e-6■■□□□ 13
SHPRH-201ENST00000275233 PDCL2Q8N4E4 241 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 KIAA0586Q9BVV6 1533 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 ZNF354CQ86Y25 554 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 RGS22Q8NE09 1264 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 TERF1P54274 439 aa13.66□□□□□ -0.22
SHPRH-201ENST00000275233 IGHDP01880 384 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 POLR3GO15318 223 aaPredicted RBP13.65□□□□□ -0.22
SHPRH-201ENST00000275233 CETN1Q12798 172 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 PDIA4P13667 645 aaKnown RBP13.65□□□□□ -0.22
SHPRH-201ENST00000275233 GSTO1P78417 241 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 MEIS3Q99687 375 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 ZRANB1Q9UGI0 708 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 EXOC1Q9NV70 894 aa13.65□□□□□ -0.22
SHPRH-201ENST00000275233 KIF20AO95235 890 aa13.64□□□□□ -0.23
SHPRH-201ENST00000275233 PAFAH1B1P43034 410 aa13.64□□□□□ -0.23
SHPRH-201ENST00000275233 DPH6Q7L8W6 267 aa13.64□□□□□ -0.23
SHPRH-201ENST00000275233 CHST3Q7LGC8 479 aa13.64□□□□□ -0.23
SHPRH-201ENST00000275233 MSH6P52701 1360 aa13.64□□□□□ -0.23
SHPRH-201ENST00000275233 HELBQ8NG08 1087 aaPredicted RBP13.64□□□□□ -0.23
SHPRH-201ENST00000275233 KIF18AQ8NI77 898 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms