RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TTC21BQ7Z4L5 1316 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP53-201ENST00000274030 CTAGE5O15320 804 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 CCDC40Q4G0X9 1142 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 PAXIP1Q6ZW49 1069 aaPredicted RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 NCOA7Q8NI08 942 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 XAGE3Q8WTP9 111 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 C14orf93Q9H972 538 aaKnown RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 TTF1Q15361 905 aaPredicted RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 COPS6Q7L5N1 327 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 C16orf71Q8IYS4 520 aaPredicted RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 CCDC97Q96F63 343 aaPredicted RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 PCDHB15Q9Y5E8 787 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 KLF18A0A0U1RQI7 1052 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 YEATS4O95619 227 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 ANAPC15P60006 121 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 PIK3R4Q99570 1358 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 F8W031 263 aaPredicted RBP13.22□□□□□ -0.29
USP53-201ENST00000274030 HCLS1P14317 486 aaPredicted RBP13.22□□□□□ -0.29
USP53-201ENST00000274030 MMRN2Q9H8L6 949 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 TMCO5BA8MYB1 307 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 TMX3Q96JJ7 454 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 PDE4BQ07343 736 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 PRPF4BQ13523 1007 aaKnown RBP13.22□□□□□ -0.29
USP53-201ENST00000274030 SLF2Q8IX21 1173 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 CALML4Q96GE6 196 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 WWC3Q9ULE0 1092 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 KIF2AO00139 706 aaPredicted RBP13.22□□□□□ -0.29
USP53-201ENST00000274030 IFFO1Q0D2I5 559 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 PTPN23Q9H3S7 1636 aa13.22□□□□□ -0.29
USP53-201ENST00000274030 RFC4P35249 363 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 ZRANB1Q9UGI0 708 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 USO1O60763 962 aaKnown RBP13.21□□□□□ -0.29
USP53-201ENST00000274030 FGFR1OPO95684 399 aaKnown RBP13.21□□□□□ -0.29
USP53-201ENST00000274030 KIF5BP33176 963 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 PAFAH1B1P43034 410 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 STX1AQ16623 288 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 C8orf58Q8NAV2 365 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 MYO1BO43795 1136 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 BAG3O95817 575 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 NBPF6Q5VWK0 638 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 NBPF5PQ86XG9 351 aaPredicted RBP13.21□□□□□ -0.29
USP53-201ENST00000274030 NBPF4Q96M43 638 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 TBC1D32Q96NH3 1257 aa13.21□□□□□ -0.29
USP53-201ENST00000274030 PA2G4Q9UQ80 394 aaKnown RBP13.21□□□□□ -0.29
USP53-201ENST00000274030 AFMP43652 599 aa13.21□□□□□ -0.3
USP53-201ENST00000274030 GBP3Q9H0R5 595 aa13.21□□□□□ -0.3
USP53-201ENST00000274030 NOP2P46087 812 aaKnown RBP13.2□□□□□ -0.3
USP53-201ENST00000274030 HLTFQ14527 1009 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP53-201ENST00000274030 ZNF830Q96NB3 372 aaPredicted RBP13.2□□□□□ -0.3
USP53-201ENST00000274030 TNNQ9UQP3 1299 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 SCAF11Q99590 1463 aaKnown RBP13.2□□□□□ -0.3
USP53-201ENST00000274030 NCOA1Q15788 1441 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 FAM135AQ9P2D6 1515 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 MAP2K1Q02750 393 aaPredicted RBP13.2□□□□□ -0.3
USP53-201ENST00000274030 LMBR1LQ6UX01 489 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 IQGAP2Q13576 1575 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 LDHCP07864 332 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 SPECC1Q5M775 1068 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 MCM5P33992 734 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 NUCB1Q02818 461 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 TRERF1Q96PN7 1200 aa13.2□□□□□ -0.3
USP53-201ENST00000274030 TEX13AQ9BXU3 409 aaPredicted RBP13.2□□□□□ -0.3
USP53-201ENST00000274030 GOLGA6L10A0A0M3HER8 536 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 TRIM21P19474 475 aaKnown RBP13.19□□□□□ -0.3
USP53-201ENST00000274030 CYP7A1P22680 504 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 SYCP3Q8IZU3 236 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 CNPY2Q9Y2B0 182 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 SBNO2Q9Y2G9 1366 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 PRC1O43663 620 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 WTAPQ15007 396 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 PUF60Q9UHX1 559 aaKnown RBP13.19□□□□□ -0.3
USP53-201ENST00000274030 CTNNA2P26232 953 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 PDE1AP54750 535 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 UBE2HP62256 183 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 CABP5Q9NP86 173 aa13.19□□□□□ -0.3
USP53-201ENST00000274030 RNF216Q9NWF9 866 aaPredicted RBP13.19□□□□□ -0.3
USP53-201ENST00000274030 RBM8AQ9Y5S9 174 aaKnown RBP13.19□□□□□ -0.3
USP53-201ENST00000274030 CHST3Q7LGC8 479 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 CABLES1Q8TDN4 633 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 UBE4AQ14139 1066 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 LRRC59Q96AG4 307 aaKnown RBP13.18□□□□□ -0.3
USP53-201ENST00000274030 SLC4A4Q9Y6R1 1079 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 KIF20AO95235 890 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 MARCKSP29966 332 aaPredicted RBP13.18□□□□□ -0.3
USP53-201ENST00000274030 KRT24Q2M2I5 525 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 CCDC12Q8WUD4 166 aaPredicted RBP13.18□□□□□ -0.3
USP53-201ENST00000274030 DNMBPQ6XZF7 1577 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 AMPD3Q01432 767 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 N4BP3O15049 544 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 ATP2B3Q16720 1220 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 ZSCAN23Q3MJ62 389 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 MAP9Q49MG5 647 aa13.18□□□□□ -0.3
USP53-201ENST00000274030 HLA-DOAP06340 250 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 SYKP43405 635 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 TRIM47Q96LD4 638 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 ALG1Q9BT22 464 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 CRNKL1Q9BZJ0 848 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms