RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 KCNG4Q8TDN1 519 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 TBC1D2Q9BYX2 928 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 UBA5Q9GZZ9 404 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 ARFGAP3Q9NP61 516 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 V9GYY5 206 aaPredicted RBP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 SPECC1Q5M775 1068 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC102BQ68D86 513 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 CRACR2BQ8N4Y2 399 aaPredicted RBP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC97Q96F63 343 aaPredicted RBP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 SELENOOQ9BVL4 669 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 SSH1Q8WYL5 1049 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 GTF2F1P35269 517 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 MPHOSPH6Q99547 160 aaKnown RBP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 EXOC6BQ9Y2D4 811 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 PIP4K2BP78356 416 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 MKNK2Q9HBH9 465 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 IL1RAPL2Q9NP60 686 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 ACTN2P35609 894 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC96Q2M329 555 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 PRDM11Q9NQV5 511 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 USP25Q9UHP3 1055 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 LMAN1P49257 510 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ANKRD36BQ8N2N9 1353 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CTAGE9A4FU28 777 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 GJB2P29033 226 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 TTC22Q5TAA0 569 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ZSCAN29Q8IWY8 852 aaPredicted RBP9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ZSCAN23Q3MJ62 389 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 FMNL3Q8IVF7 1028 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 JADE2Q9NQC1 790 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ZNF165P49910 485 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CYB5RLQ6IPT4 315 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 PPP1R14CQ8TAE6 165 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 KIAA0586Q9BVV6 1533 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 NBPF8Q3BBV2 869 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CKAP2LQ8IYA6 745 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 TBC1D32Q96NH3 1257 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 SCLT1Q96NL6 688 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 HOMER2Q9NSB8 354 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 PABPN1LA6NDY0 278 aaKnown RBP9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CYLC1P35663 651 aaPredicted RBP9.13□□□□□ -0.95
LIMD1-201ENST00000273317 PDE4BQ07343 736 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC77Q9BR77 488 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ECHDC1Q9NTX5 307 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 LAMC3Q9Y6N6 1575 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 ADGBQ8N7X0 1667 aa9.13□□□□□ -0.95
LIMD1-201ENST00000273317 TBCAO75347 108 aaKnown RBP9.12□□□□□ -0.95
LIMD1-201ENST00000273317 LMBR1Q8WVP7 490 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 ABCA10Q8WWZ4 1543 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 ZNF213O14771 459 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 KIF4AO95239 1232 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 TBC1D9Q6ZT07 1266 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 ZPR1O75312 459 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 LRSAM1Q6UWE0 723 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 GOLGA1Q92805 767 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 MACROD2A1Z1Q3 448 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 GSTO1P78417 241 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 TTC16Q8NEE8 873 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 TSGA10Q9BZW7 698 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 WDHD1O75717 1129 aaPredicted RBP9.12□□□□□ -0.95
LIMD1-201ENST00000273317 KIAA0753Q2KHM9 967 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 CEP128Q6ZU80 1094 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 ANKLE2Q86XL3 938 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 SF3B2Q13435 895 aaKnown RBP9.12□□□□□ -0.95
LIMD1-201ENST00000273317 TMOD3Q9NYL9 352 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 ANKIB1Q9P2G1 1089 aa9.12□□□□□ -0.95
LIMD1-201ENST00000273317 IFIT3O14879 490 aaKnown RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 MNAT1P51948 309 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 A0A1W2PRG0 241 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 NLRP5P59047 1200 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 RRS1Q15050 365 aaKnown RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 FAM200AQ8TCP9 573 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 KRT23Q9C075 422 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 TRAF1Q13077 416 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 RAPGEF6Q8TEU7 1601 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CTAGE15A4D2H0 777 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CTAGE8P0CG41 777 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 GNG11P61952 73 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CTAGE6Q86UF2 777 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CTAGE4Q8IX94 777 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 PIBF1Q8WXW3 757 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 JAKMIP2Q96AA8 810 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 DBF4Q9UBU7 674 aaPredicted RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 RANBP6O60518 1105 aaKnown RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 SYKP43405 635 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 METAP2P50579 478 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 NCOA7Q8NI08 942 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 IQCGQ9H095 443 aaKnown RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 ARHGEF11O15085 1522 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC129Q6ZRS4 1044 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 MFSD6Q6ZSS7 791 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC61Q9Y6R9 512 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 RTL9Q8NET4 1388 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CNNM2Q9H8M5 875 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 MINDY4BA8MYZ0 360 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 HDAC1Q13547 482 aaPredicted RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 SPINK5Q9NQ38 1064 aaPredicted RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC121Q6ZUS5 278 aa9.11□□□□□ -0.95
LIMD1-201ENST00000273317 ZNF444Q8N0Y2 327 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms