RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZBTB1Q9Y2K1 713 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 TTC41PQ6P2S7 1318 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 IL6STP40189 918 aaPredicted RBP13.91□□□□□ -0.18
VPS4A-201ENST00000254950 ANKRD18AQ8IVF6 992 aa13.91□□□□□ -0.18
VPS4A-201ENST00000254950 ZNF772Q68DY9 489 aaPredicted RBP13.9□□□□□ -0.18
VPS4A-201ENST00000254950 LRP2BPQ9P2M1 347 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 FAM184AQ8NB25 1140 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 TFCP2L1Q9NZI6 479 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 MON2Q7Z3U7 1717 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 ST5P78524 1137 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 MAP3K15Q6ZN16 1313 aa13.9□□□□□ -0.18
VPS4A-201ENST00000254950 ZRSR1Q15695 479 aaKnown RBP13.89□□□□□ -0.19
VPS4A-201ENST00000254950 C8orf34Q49A92 452 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 ATG3Q9NT62 314 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 EYA2O00167 538 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 PDE8AO60658 829 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 HSPA1LP34931 641 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 SEPT12Q8IYM1 358 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 ABCF2Q9UG63 623 aa13.89□□□□□ -0.19
VPS4A-201ENST00000254950 CHD2O14647 1828 aaKnown RBP13.89□□□□□ -0.19
VPS4A-201ENST00000254950 GOLIM4O00461 696 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 CRKLP46109 303 aaKnown RBP13.88□□□□□ -0.19
VPS4A-201ENST00000254950 NACAP1Q9BZK3 213 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 RAI14Q9P0K7 980 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 CTNNA3Q9UI47 895 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 CYP46A1Q9Y6A2 500 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 SPATA31A1Q5TZJ5 1347 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 VPS72Q15906 364 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 GIGYF2Q6Y7W6 1299 aaKnown RBP13.88□□□□□ -0.19
VPS4A-201ENST00000254950 FAM196AQ6ZSG2 479 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 OVOS2A0A0G2JMS6 1433 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 TFCP2Q12800 502 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 SMC3Q9UQE7 1217 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 CPLX1O14810 134 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 SNRKQ9NRH2 765 aa13.88□□□□□ -0.19
VPS4A-201ENST00000254950 ANKRD26Q9UPS8 1709 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 UQCRFS1P1P0C7P4 283 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 HCLS1P14317 486 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-201ENST00000254950 FAM182BQ5T319 152 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 FOXD4L5Q5VV16 416 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-201ENST00000254950 OTUD7AQ8TE49 926 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-201ENST00000254950 FOXD4L4Q8WXT5 416 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-201ENST00000254950 ERICH2A1L162 156 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 MAP3K12Q12852 859 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 NUCB2P80303 420 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 CHAF1AQ13111 956 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-201ENST00000254950 KRT32Q14532 448 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 ATP6V1DQ9Y5K8 247 aa13.87□□□□□ -0.19
VPS4A-201ENST00000254950 PALLDQ8WX93 1383 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 H3BQV1 296 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 PCCAP05165 728 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-201ENST00000254950 IFFO2Q5TF58 517 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 TBC1D32Q96NH3 1257 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 BLOC1S2Q6QNY1 142 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 KRT27Q7Z3Y8 459 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 ITGA6P23229 1130 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 TTF1Q15361 905 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-201ENST00000254950 NFXL1Q6ZNB6 911 aa13.86□□□□□ -0.19
VPS4A-201ENST00000254950 GJD4Q96KN9 370 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-201ENST00000254950 K7ELQ4 463 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-201ENST00000254950 NKX1-1Q15270 411 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-201ENST00000254950 ZBTB38Q8NAP3 1195 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-201ENST00000254950 AIDAQ96BJ3 306 aa13.85□□□□□ -0.19
VPS4A-201ENST00000254950 PPP1R1BQ9UD71 204 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-201ENST00000254950 CSPP1Q1MSJ5 1256 aa13.85□□□□□ -0.19
VPS4A-201ENST00000254950 JAKMIP1Q96N16 626 aaKnown RBP13.85□□□□□ -0.19
VPS4A-201ENST00000254950 MEGF6O75095 1541 aa13.85□□□□□ -0.19
VPS4A-201ENST00000254950 SPATA31A5Q5VU36 1347 aa13.85□□□□□ -0.19
VPS4A-201ENST00000254950 SPATA31A7Q8IWB4 1347 aa13.85□□□□□ -0.19
VPS4A-201ENST00000254950 AKAP17AQ02040 695 aaKnown RBP13.84□□□□□ -0.19
VPS4A-201ENST00000254950 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.84□□□□□ -0.19
VPS4A-201ENST00000254950 AOX1Q06278 1338 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 DDX11L8A8MPP1 907 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 APBA3O96018 575 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 BARGINQ6ZT62 677 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 ANKRD1Q15327 319 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 ESYT1Q9BSJ8 1104 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 NALCNQ8IZF0 1738 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 AKAP12Q02952 1782 aa13.84□□□□□ -0.19
VPS4A-201ENST00000254950 SART3Q15020 963 aaKnown RBP13.83□□□□□ -0.19
VPS4A-201ENST00000254950 PRPF40BQ6NWY9 871 aaKnown RBP13.83□□□□□ -0.19
VPS4A-201ENST00000254950 CNBD1Q8NA66 436 aa13.83□□□□□ -0.19
VPS4A-201ENST00000254950 TRIM34Q9BYJ4 488 aa13.83□□□□□ -0.19
VPS4A-201ENST00000254950 RXRBP28702 533 aa13.83□□□□□ -0.2
VPS4A-201ENST00000254950 TNNI3KQ59H18 835 aa13.83□□□□□ -0.2
VPS4A-201ENST00000254950 ZNF594Q96JF6 807 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 FPGT-TNNI3KV9GXZ4 949 aa13.83□□□□□ -0.2
VPS4A-201ENST00000254950 ERVV-1B6SEH8 477 aa13.83□□□□□ -0.2
VPS4A-201ENST00000254950 SLC3A2P08195 630 aaKnown RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 HELBQ8NG08 1087 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 SETD1AO15047 1707 aaKnown RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 COL5A2P05997 1499 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 SIRT2Q8IXJ6 389 aa13.83□□□□□ -0.2
VPS4A-201ENST00000254950 U3KPZ7 1027 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-201ENST00000254950 IBTKQ9P2D0 1353 aaPredicted RBP13.82□□□□□ -0.2
VPS4A-201ENST00000254950 C6orf229H3BNL8 230 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 ZFYP08048 801 aaPredicted RBP13.82□□□□□ -0.2
VPS4A-201ENST00000254950 UPF3BQ9BZI7 483 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms