RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 SIL1Q9H173 461 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 SNRKQ9NRH2 765 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 TMX3Q96JJ7 454 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 LTBP4Q8N2S1 1624 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 ZGPATQ8N5A5 531 aaKnown RBP23.23■■□□□ 1.31
YBX3-201ENST00000228251 CCDC8Q9H0W5 538 aaPredicted RBP23.23■■□□□ 1.31
YBX3-201ENST00000228251 NRAPQ86VF7 1730 aa23.23■■□□□ 1.31
YBX3-201ENST00000228251 NUCB2P80303 420 aa23.22■■□□□ 1.31
YBX3-201ENST00000228251 VSIG10Q8N0Z9 540 aa23.22■■□□□ 1.31
YBX3-201ENST00000228251 CWC27Q6UX04 472 aaKnown RBP23.22■■□□□ 1.31
YBX3-201ENST00000228251 KCNB2Q92953 911 aa23.22■■□□□ 1.31
YBX3-201ENST00000228251 TMOD3Q9NYL9 352 aa23.22■■□□□ 1.31
YBX3-201ENST00000228251 SNX14Q9Y5W7 946 aa23.22■■□□□ 1.31
YBX3-201ENST00000228251 PIGBQ92521 554 aa23.21■■□□□ 1.31
YBX3-201ENST00000228251 CWC25Q9NXE8 425 aaPredicted RBP23.21■■□□□ 1.31
YBX3-201ENST00000228251 CCDC191Q8NCU4 936 aa23.2■■□□□ 1.3
YBX3-201ENST00000228251 RUFY2Q8WXA3 655 aa23.2■■□□□ 1.3
YBX3-201ENST00000228251 DIAPH3Q9NSV4 1193 aa23.2■■□□□ 1.3
YBX3-201ENST00000228251 BCL9O00512 1426 aa23.2■■□□□ 1.3
YBX3-201ENST00000228251 ISCA1Q9BUE6 129 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 ANKRD36CQ5JPF3 1778 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 TNNI3KQ59H18 835 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 RASEFQ8IZ41 740 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 TTC14Q96N46 770 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 DBNLQ9UJU6 430 aaKnown RBP23.19■■□□□ 1.3
YBX3-201ENST00000228251 ZDHHC9Q9Y397 364 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 FPGT-TNNI3KV9GXZ4 949 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 JCADQ9P266 1359 aa23.19■■□□□ 1.3
YBX3-201ENST00000228251 BAG4O95429 457 aaKnown RBP23.18■■□□□ 1.3
YBX3-201ENST00000228251 PKP1Q13835 747 aa23.18■■□□□ 1.3
YBX3-201ENST00000228251 LMBR1LQ6UX01 489 aa23.18■■□□□ 1.3
YBX3-201ENST00000228251 INTS4Q96HW7 963 aaKnown RBP23.18■■□□□ 1.3
YBX3-201ENST00000228251 ATG3Q9NT62 314 aa23.18■■□□□ 1.3
YBX3-201ENST00000228251 ASAP1Q9ULH1 1129 aa23.18■■□□□ 1.3
YBX3-201ENST00000228251 PTMSP20962 102 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 TFCP2Q12800 502 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 UPF3BQ9BZI7 483 aaKnown RBP23.17■■□□□ 1.3
YBX3-201ENST00000228251 MED23Q9ULK4 1368 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 FSD2A1L4K1 749 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 HIP1O00291 1037 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 ATP5JP18859 108 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 PTH1RQ03431 593 aa23.17■■□□□ 1.3
YBX3-201ENST00000228251 DOT1LQ8TEK3 1739 aa23.16■■□□□ 1.3
YBX3-201ENST00000228251 TRIM28Q13263 835 aaKnown RBP23.16■■□□□ 1.3
YBX3-201ENST00000228251 TEX13AQ9BXU3 409 aaPredicted RBP23.16■■□□□ 1.3
YBX3-201ENST00000228251 ZBTB3Q9H5J0 574 aa23.16■■□□□ 1.3
YBX3-201ENST00000228251 RFX7Q2KHR2 1363 aa23.15■■□□□ 1.3
YBX3-201ENST00000228251 KIAA1211Q6ZU35 1233 aa23.15■■□□□ 1.3
YBX3-201ENST00000228251 ATG9AQ7Z3C6 839 aa23.15■■□□□ 1.3
YBX3-201ENST00000228251 CCDC171Q6TFL3 1326 aa23.15■■□□□ 1.3
YBX3-201ENST00000228251 DNAJC10Q8IXB1 793 aa23.14■■□□□ 1.3
YBX3-201ENST00000228251 BOLA2Q9H3K6 86 aa23.14■■□□□ 1.3
YBX3-201ENST00000228251 NMIQ13287 307 aaPredicted RBP23.14■■□□□ 1.29
YBX3-201ENST00000228251 NECTIN1Q15223 517 aa23.14■■□□□ 1.29
YBX3-201ENST00000228251 FAM227BQ96M60 508 aa23.14■■□□□ 1.29
YBX3-201ENST00000228251 PHLPP1O60346 1717 aa23.13■■□□□ 1.29
YBX3-201ENST00000228251 TCIRG1Q13488 830 aa23.13■■□□□ 1.29
YBX3-201ENST00000228251 SKOR2Q2VWA4 1001 aaPredicted RBP23.13■■□□□ 1.29
YBX3-201ENST00000228251 SLC4A9Q96Q91 983 aa23.12■■□□□ 1.29
YBX3-201ENST00000228251 GPR108Q9NPR9 543 aa23.12■■□□□ 1.29
YBX3-201ENST00000228251 MAP4K1Q92918 833 aa23.12■■□□□ 1.29
YBX3-201ENST00000228251 TM6SF1Q9BZW5 370 aa23.12■■□□□ 1.29
YBX3-201ENST00000228251 NUP98P52948 1817 aa23.11■■□□□ 1.29
YBX3-201ENST00000228251 A0A0D9SFI3 127 aa23.11■■□□□ 1.29
YBX3-201ENST00000228251 CICQ96RK0 1608 aaPredicted RBP23.11■■□□□ 1.29
YBX3-201ENST00000228251 SPEF2Q9C093 1822 aa23.1■■□□□ 1.29
YBX3-201ENST00000228251 DBNDD2Q9BQY9 259 aa23.1■■□□□ 1.29
YBX3-201ENST00000228251 ZNF609O15014 1411 aa23.1■■□□□ 1.29
YBX3-201ENST00000228251 PLA2G12BQ9BX93 195 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 MYH3P11055 1940 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 RREB1Q92766 1687 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 CIAO1O76071 339 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 BRD1O95696 1058 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 HAUS7Q99871 368 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 FSD1Q9BTV5 496 aa23.09■■□□□ 1.29
YBX3-201ENST00000228251 RPAP1Q9BWH6 1393 aaPredicted RBP23.09■■□□□ 1.29
YBX3-201ENST00000228251 NWD2Q9ULI1 1742 aa23.08■■□□□ 1.29
YBX3-201ENST00000228251 STARD3NLO95772 234 aa23.08■■□□□ 1.29
YBX3-201ENST00000228251 ZSWIM6Q9HCJ5 1215 aa23.08■■□□□ 1.29
YBX3-201ENST00000228251 RBM8AQ9Y5S9 174 aaKnown RBP23.08■■□□□ 1.29
YBX3-201ENST00000228251 MAP3K15Q6ZN16 1313 aa23.07■■□□□ 1.28
YBX3-201ENST00000228251 CYP19A1P11511 503 aaPredicted RBP23.07■■□□□ 1.28
YBX3-201ENST00000228251 IL15P40933 162 aaPredicted RBP23.07■■□□□ 1.28
YBX3-201ENST00000228251 RUFY3Q7L099 469 aa23.07■■□□□ 1.28
YBX3-201ENST00000228251 EDC3Q96F86 508 aaKnown RBP23.07■■□□□ 1.28
YBX3-201ENST00000228251 GZF1Q9H116 711 aaPredicted RBP23.07■■□□□ 1.28
YBX3-201ENST00000228251 EYA2O00167 538 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 PCCAP05165 728 aaPredicted RBP23.06■■□□□ 1.28
YBX3-201ENST00000228251 AK2P54819 239 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 ADCK5Q3MIX3 580 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 PRPF40BQ6NWY9 871 aaKnown RBP23.06■■□□□ 1.28
YBX3-201ENST00000228251 GOLGA6L22H0YM25 854 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 L1TD1Q5T7N2 865 aaKnown RBP23.06■■□□□ 1.28
YBX3-201ENST00000228251 CREB3L3Q68CJ9 461 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 LMBRD1Q9NUN5 540 aa23.06■■□□□ 1.28
YBX3-201ENST00000228251 EXOC5O00471 708 aa23.05■■□□□ 1.28
YBX3-201ENST00000228251 KLHL40Q2TBA0 621 aa23.05■■□□□ 1.28
YBX3-201ENST00000228251 GIGYF2Q6Y7W6 1299 aaKnown RBP23.05■■□□□ 1.28
YBX3-201ENST00000228251 ZNF589Q86UQ0 364 aaPredicted RBP23.05■■□□□ 1.28
YBX3-201ENST00000228251 SPATA31A1Q5TZJ5 1347 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms