RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 IFIT3O14879 490 aaKnown RBP16.14■□□□□ 0.17
SIX4-201ENST00000216513 KCNQ4P56696 695 aa16.14■□□□□ 0.17
SIX4-201ENST00000216513 PDRG1Q9NUG6 133 aa16.14■□□□□ 0.17
SIX4-201ENST00000216513 SUPT20HQ8NEM7 779 aa16.14■□□□□ 0.17
SIX4-201ENST00000216513 KSR2Q6VAB6 950 aa16.13■□□□□ 0.17
SIX4-201ENST00000216513 HAND2P61296 217 aa16.13■□□□□ 0.17
SIX4-201ENST00000216513 MAGEC2Q9UBF1 373 aaPredicted RBP16.13■□□□□ 0.17
SIX4-201ENST00000216513 HSPA1LP34931 641 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 ZNF396Q96N95 335 aaPredicted RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 PSDA5PKW4 1024 aaPredicted RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 RBM10P98175 930 aaKnown RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 ALDH1B1P30837 517 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 TSHZ3Q63HK5 1081 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 ZNF790Q6PG37 636 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 SLC12A7Q9Y666 1083 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 LDHBP07195 334 aaKnown RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 DHX8Q14562 1220 aaKnown RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 CATIPQ7Z7H3 387 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 TANGO6Q9C0B7 1094 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 CWF19L2Q2TBE0 894 aaKnown RBP16.12■□□□□ 0.17
SIX4-201ENST00000216513 CCDC144CPQ8IYA2 1237 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 PLCD3Q8N3E9 789 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 DDX11Q96FC9 970 aa16.12■□□□□ 0.17
SIX4-201ENST00000216513 GRM8O00222 908 aa16.11■□□□□ 0.17
SIX4-201ENST00000216513 SAMD9Q5K651 1589 aa16.11■□□□□ 0.17
SIX4-201ENST00000216513 TARBP1Q13395 1621 aaKnown RBP16.11■□□□□ 0.17
SIX4-201ENST00000216513 SLC4A4Q9Y6R1 1079 aa16.11■□□□□ 0.17
SIX4-201ENST00000216513 KRT32Q14532 448 aa16.11■□□□□ 0.17
SIX4-201ENST00000216513 PRPF40BQ6NWY9 871 aaKnown RBP16.11■□□□□ 0.17
SIX4-201ENST00000216513 KIAA0232Q92628 1395 aa16.11■□□□□ 0.17
SIX4-201ENST00000216513 WASF1Q92558 559 aa16.1■□□□□ 0.17
SIX4-201ENST00000216513 MAST1Q9Y2H9 1570 aa16.1■□□□□ 0.17
SIX4-201ENST00000216513 PARP10Q53GL7 1025 aa16.1■□□□□ 0.17
SIX4-201ENST00000216513 CKAP2LQ8IYA6 745 aa16.1■□□□□ 0.17
SIX4-201ENST00000216513 COL17A1Q9UMD9 1497 aaPredicted RBP16.1■□□□□ 0.17
SIX4-201ENST00000216513 TRIM21P19474 475 aaKnown RBP16.09■□□□□ 0.17
SIX4-201ENST00000216513 DRC1Q96MC2 740 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.09■□□□□ 0.17
SIX4-201ENST00000216513 CASTP20810 708 aaKnown RBP16.09■□□□□ 0.17
SIX4-201ENST00000216513 LGR6Q9HBX8 967 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 PDCP20941 246 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 SLC52A2Q9HAB3 445 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 PLEKHH1Q9ULM0 1364 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 MFSD6Q6ZSS7 791 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 FAM177A1Q8N128 213 aaPredicted RBP16.09■□□□□ 0.17
SIX4-201ENST00000216513 TMOD4Q9NZQ9 345 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 SMC2O95347 1197 aa16.09■□□□□ 0.17
SIX4-201ENST00000216513 ZBTB7AO95365 584 aa16.08■□□□□ 0.17
SIX4-201ENST00000216513 ZNF771Q7L3S4 317 aaPredicted RBP16.08■□□□□ 0.17
SIX4-201ENST00000216513 MIGA1Q8NAN2 632 aa16.08■□□□□ 0.17
SIX4-201ENST00000216513 SH3TC1Q8TE82 1336 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 RAB3GAP1Q15042 981 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 UBA5Q9GZZ9 404 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 RARSP54136 660 aaKnown RBP16.08■□□□□ 0.16
SIX4-201ENST00000216513 NLRP5P59047 1200 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 TTC16Q8NEE8 873 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 TRAK2O60296 914 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 JMYQ8N9B5 988 aa16.08■□□□□ 0.16
SIX4-201ENST00000216513 SAP30BPQ9UHR5 308 aaKnown RBP16.08■□□□□ 0.16
SIX4-201ENST00000216513 RBM6P78332 1123 aaKnown RBP16.07■□□□□ 0.16
SIX4-201ENST00000216513 PRAG1Q86YV5 1406 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 EFCAB6Q5THR3 1501 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 ME1P48163 572 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 SBNO1A3KN83 1393 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 MAGEB6P1A0A0J9YX57 407 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 MYO5CQ9NQX4 1742 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 KINO60870 393 aaKnown RBP16.07■□□□□ 0.16
SIX4-201ENST00000216513 KRT24Q2M2I5 525 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 SHANK2Q9UPX8 1470 aa16.07■□□□□ 0.16
SIX4-201ENST00000216513 RAB11FIP4Q86YS3 637 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 ZYXQ15942 572 aaKnown RBP16.06■□□□□ 0.16
SIX4-201ENST00000216513 GOLGA8AA7E2F4 631 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 GOLGA8BA8MQT2 603 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 NLGN1Q8N2Q7 840 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 ABT1Q9ULW3 272 aaKnown RBP16.06■□□□□ 0.16
SIX4-201ENST00000216513 ZCCHC11Q5TAX3 1644 aaKnown RBP16.06■□□□□ 0.16
SIX4-201ENST00000216513 C8orf58Q8NAV2 365 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 DCPSQ96C86 337 aaKnown RBP16.06■□□□□ 0.16
SIX4-201ENST00000216513 MCM9Q9NXL9 1143 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 PLEKHG1Q9ULL1 1385 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 CCDC196A0A1B0GTZ2 297 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 NUCB2P80303 420 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 BRINP3Q76B58 766 aa16.06■□□□□ 0.16
SIX4-201ENST00000216513 TMEM67Q5HYA8 995 aa16.05■□□□□ 0.16
SIX4-201ENST00000216513 WDR70Q9NW82 654 aa16.05■□□□□ 0.16
SIX4-201ENST00000216513 NASPP49321 788 aaPredicted RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 MAP3K9P80192 1104 aa16.05■□□□□ 0.16
SIX4-201ENST00000216513 PA2G4Q9UQ80 394 aaKnown RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 IL15P40933 162 aaPredicted RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 ITGA6P23229 1130 aa16.05■□□□□ 0.16
SIX4-201ENST00000216513 SKOR2Q2VWA4 1001 aaPredicted RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 LARP1BQ659C4 914 aaKnown RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 ECHDC1Q9NTX5 307 aa16.05■□□□□ 0.16
SIX4-201ENST00000216513 SEPT11Q9NVA2 429 aaKnown RBP16.05■□□□□ 0.16
SIX4-201ENST00000216513 SLC9C2Q5TAH2 1124 aa16.04■□□□□ 0.16
SIX4-201ENST00000216513 USPL1Q5W0Q7 1092 aa16.04■□□□□ 0.16
SIX4-201ENST00000216513 IVNS1ABPQ9Y6Y0 642 aa16.04■□□□□ 0.16
SIX4-201ENST00000216513 PLCG2P16885 1265 aa16.04■□□□□ 0.16
SIX4-201ENST00000216513 CAMK4Q16566 473 aa16.04■□□□□ 0.16
SIX4-201ENST00000216513 CCDC194A0A1B0GVG4 234 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms