RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 BABAM1Q9NWV8 329 aa16.72■□□□□ 0.27
USH1C-201ENST00000005226 PRDM4Q9UKN5 801 aa16.72■□□□□ 0.27
USH1C-201ENST00000005226 SLC27A2O14975 620 aa16.72■□□□□ 0.27
USH1C-201ENST00000005226 CHGBP05060 677 aa16.72■□□□□ 0.27
USH1C-201ENST00000005226 ZNF530Q6P9A1 599 aaPredicted RBP16.72■□□□□ 0.27
USH1C-201ENST00000005226 PRIMPOLQ96LW4 560 aa16.72■□□□□ 0.27
USH1C-201ENST00000005226 USP42Q9H9J4 1324 aaKnown RBP16.72■□□□□ 0.27
USH1C-201ENST00000005226 CCDC192P0DO97 292 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 KCNA6P17658 529 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 CBX1P83916 185 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 LARP1Q6PKG0 1096 aaKnown RBP16.71■□□□□ 0.27
USH1C-201ENST00000005226 SUCLG2Q96I99 432 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 SH2B1Q9NRF2 756 aaPredicted RBP16.71■□□□□ 0.27
USH1C-201ENST00000005226 NRBP1Q9UHY1 535 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 NDUFB9Q9Y6M9 179 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 EVI5LQ96CN4 794 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 DACT1Q9NYF0 836 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 MRVI1Q9Y6F6 885 aa16.71■□□□□ 0.27
USH1C-201ENST00000005226 HMGN5P82970 282 aaKnown RBP16.7■□□□□ 0.26
USH1C-201ENST00000005226 LRMPQ12912 555 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 KAZALD1Q96I82 304 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 CCDC94Q9BW85 323 aaPredicted RBP16.7■□□□□ 0.26
USH1C-201ENST00000005226 BCL2L12Q9HB09 334 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 CEMIPQ8WUJ3 1361 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 RIOK3O14730 519 aaKnown RBP16.7■□□□□ 0.26
USH1C-201ENST00000005226 TYRO3Q06418 890 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 MTERF4Q7Z6M4 381 aaKnown RBP16.7■□□□□ 0.26
USH1C-201ENST00000005226 MAP4K1Q92918 833 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 DDX11Q96FC9 970 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 TM6SF1Q9BZW5 370 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 KIF3AQ9Y496 699 aa16.7■□□□□ 0.26
USH1C-201ENST00000005226 KRT85P78386 507 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 ZNF589Q86UQ0 364 aaPredicted RBP16.69■□□□□ 0.26
USH1C-201ENST00000005226 KCNB2Q92953 911 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 NUP62CLQ9H1M0 184 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 BICC1Q9H694 974 aaKnown RBP16.69■□□□□ 0.26
USH1C-201ENST00000005226 MAP3K11Q16584 847 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 GPATCH3Q96I76 525 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 FSD1Q9BTV5 496 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 CACNA1FO60840 1977 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 ATP2B3Q16720 1220 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 ANO6Q4KMQ2 910 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 PPP4R3BQ5MIZ7 849 aa16.69■□□□□ 0.26
USH1C-201ENST00000005226 DBF4Q9UBU7 674 aaPredicted RBP16.69■□□□□ 0.26
USH1C-201ENST00000005226 DIP2AQ14689 1571 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 SPDYE4A6NLX3 237 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 JAK2O60674 1132 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 FOSBP53539 338 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 BLOC1S2Q6QNY1 142 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 CCDC186Q7Z3E2 898 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 DRC7Q8IY82 874 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 G3BP1Q13283 466 aaKnown RBP eCLIP16.68■□□□□ 0.26
USH1C-201ENST00000005226 MTX1Q13505 466 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 TOB2Q14106 344 aaPredicted RBP16.68■□□□□ 0.26
USH1C-201ENST00000005226 TNMDQ9H2S6 317 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 CBX8Q9HC52 389 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 TBX22Q9Y458 520 aa16.68■□□□□ 0.26
USH1C-201ENST00000005226 GOLGA6L4A6NEF3 574 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 CEBPZQ03701 1054 aaKnown RBP16.67■□□□□ 0.26
USH1C-201ENST00000005226 KSR2Q6VAB6 950 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 FAM200AQ8TCP9 573 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 IP6K1Q92551 441 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 SPATA32Q96LK8 384 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 CCDC9Q9Y3X0 531 aaKnown RBP16.67■□□□□ 0.26
USH1C-201ENST00000005226 PPFIA3O75145 1194 aa16.67■□□□□ 0.26
USH1C-201ENST00000005226 ZHX1Q9UKY1 873 aaPredicted RBP16.67■□□□□ 0.26
USH1C-201ENST00000005226 GTF2F1P35269 517 aaKnown RBP eCLIP16.66■□□□□ 0.26
USH1C-201ENST00000005226 GIGYF1O75420 1035 aaPredicted RBP16.66■□□□□ 0.26
USH1C-201ENST00000005226 NR1I2O75469 434 aa16.66■□□□□ 0.26
USH1C-201ENST00000005226 LRRC2Q9BYS8 371 aa16.66■□□□□ 0.26
USH1C-201ENST00000005226 A0A087WWV3 80 aa16.65■□□□□ 0.26
USH1C-201ENST00000005226 LEO1Q8WVC0 666 aaPredicted RBP16.65■□□□□ 0.26
USH1C-201ENST00000005226 RPS6KB1P23443 525 aa16.65■□□□□ 0.26
USH1C-201ENST00000005226 CCDC129Q6ZRS4 1044 aa16.65■□□□□ 0.26
USH1C-201ENST00000005226 PGBD1Q96JS3 809 aa16.65■□□□□ 0.26
USH1C-201ENST00000005226 GRM8O00222 908 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 RNMTO43148 476 aaKnown RBP16.64■□□□□ 0.25
USH1C-201ENST00000005226 PIP4K2AP48426 406 aaPredicted RBP16.64■□□□□ 0.25
USH1C-201ENST00000005226 EPHA10Q5JZY3 1008 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 ERC1Q8IUD2 1116 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 TRIM5Q9C035 493 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 DNAJC25Q9H1X3 360 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 MYL6BP14649 208 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 PSMA5P28066 241 aa16.64■□□□□ 0.25
USH1C-201ENST00000005226 SMAP1Q8IYB5 467 aaPredicted RBP16.64■□□□□ 0.25
USH1C-201ENST00000005226 C16orf45Q96MC5 204 aaPredicted RBP16.64■□□□□ 0.25
USH1C-201ENST00000005226 ALDH1L1O75891 902 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 HOXB7P09629 217 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 AKAP4Q5JQC9 854 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 BICD2Q8TD16 824 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 SEC62Q99442 399 aaKnown RBP16.63■□□□□ 0.25
USH1C-201ENST00000005226 SLC39A6Q13433 755 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 NAA30Q147X3 362 aaPredicted RBP16.63■□□□□ 0.25
USH1C-201ENST00000005226 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
USH1C-201ENST00000005226 N4BP2Q86UW6 1770 aaPredicted RBP16.63■□□□□ 0.25
USH1C-201ENST00000005226 GOLGA6L6A8MZA4 724 aa16.62■□□□□ 0.25
USH1C-201ENST00000005226 NPHP4O75161 1426 aaPredicted RBP16.62■□□□□ 0.25
USH1C-201ENST00000005226 SLFNL1Q499Z3 407 aa16.62■□□□□ 0.25
USH1C-201ENST00000005226 PLEKHO1Q53GL0 409 aaPredicted RBP16.62■□□□□ 0.25
USH1C-201ENST00000005226 LMOD2Q6P5Q4 547 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms