RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KLRC4-KLRK1H3BQV0 150 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SPINT1O43278 529 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CSO75390 466 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CHRNB4P30926 498 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C1DQ13901 141 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C5orf47Q569G3 176 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF585AQ6P3V2 769 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TEX261Q6UWH6 196 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ALKAL2Q6UX46 152 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJC22Q8N4W6 341 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FIBCD1Q8N539 461 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FAM181AQ8N9Y4 354 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CTDSP1Q9GZU7 261 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 U3KQ87 197 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 V9GYY9 64 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PQH9 124 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZBTB7BO15156 539 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 HPGDSO60760 199 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GNAZP19086 355 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 JAM2P57087 298 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 EFCAB12Q6NXP0 572 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DBX2Q6ZNG2 339 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CENPVQ7Z7K6 275 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C12orf76Q8N812 135 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR2AE1Q8NHA4 323 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SCAMP5Q8TAC9 235 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GNPDA2Q8TDQ7 276 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RAB3CQ96E17 227 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CENPNQ96H22 339 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FMN1Q68DA7 1419 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF264O43296 627 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ANXA9O76027 345 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 F11P03951 625 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GLB1P16278 677 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TAC1P20366 129 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DUSP7Q16829 419 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FLYWCH1Q4VC44 716 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 WDR59Q6PJI9 974 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MPZL3Q6UWV2 235 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C3P1Q6ZMU1 363 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLC29A4Q7RTT9 530 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SPRYD4Q8WW59 207 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SYT17Q9BSW7 474 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM121Q9BTD3 319 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FAIM2Q9BWQ8 316 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF436Q9C0F3 470 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ELOVL4Q9GZR5 314 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SERTAD3Q9UJW9 196 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LYVE1Q9Y5Y7 322 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SETD1AO15047 1707 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 UBE2QL1A1L167 161 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 M0R129 80 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CILPO75339 1184 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR2F2O95006 317 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 IFNA2P01563 188 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PPP3R1P63098 170 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SOWAHAQ2M3V2 549 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ASPHD2Q6ICH7 369 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PDLIM5Q96HC4 596 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 VAT1LQ9HCJ6 419 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR6C3Q9NZP0 311 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR12D3Q9UGF7 316 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PDS5BQ9NTI5 1447 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GRM6O15303 877 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 BUD23O43709 281 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MSX1P28360 303 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CAPZBP47756 277 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 EIF4HQ15056 248 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SGCBQ16585 318 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM249Q2WGJ8 235 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PRSS42Q7Z5A4 293 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ADGRG5Q8IZF4 528 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 BCORP1Q8N888 145 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 EGLN2Q96KS0 407 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CNTNAP3Q9BZ76 1288 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HRH4Q9H3N8 390 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FLG2Q5D862 2391 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CDRT15L2A8MXV6 281 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SPRY1O43609 319 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GLSO94925 669 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SRFP11831 508 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 JUNBP17275 347 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 COILP38432 576 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OPRL1P41146 370 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TOB1P50616 345 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GHRHRQ02643 423 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF91Q05481 1191 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DUSP28Q4G0W2 176 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LIPMQ5VYY2 423 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR2A2Q6IF42 318 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ASRGL1Q7L266 308 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC35C1Q96A29 364 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 BTF3L4Q96K17 158 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LINC00052Q96N35 136 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 BARHL1Q9BZE3 327 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 POFUT1Q9H488 388 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SERHLQ9NQF3 203 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR2S2Q9NQN1 319 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MARCOQ9UEW3 520 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CGGBP1Q9UFW8 167 aaPredicted RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms