RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GPR149Q86SP6 731 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PYROXD2Q8N2H3 581 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GPR150Q8NGU9 434 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 FRZBQ92765 325 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NSUN4Q96CB9 384 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PPCDCQ96CD2 204 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PANX1Q96RD7 426 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 EDEM2Q9BV94 578 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MINDY3Q9H8M7 445 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SMCO4Q9NRQ5 59 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MINPP1Q9UNW1 487 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TIMM13Q9Y5L4 95 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0A6YYH2 397 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 A6NJ64 397 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 J3QRK9 145 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FABP3P05413 133 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CYC1P08574 325 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 METTL15P1P0C7V9 234 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GNAZP19086 355 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CRISP3P54108 245 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF816Q0VGE8 651 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LCP2Q13094 533 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF273Q14593 569 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 STK11Q15831 433 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LYRM7Q5U5X0 104 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 DGAT2L7PQ6IED9 249 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF343Q6P1L6 599 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 VASH2Q86V25 355 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF687Q8N1G0 1237 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ANGPTL6Q8NI99 470 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF420Q8TAQ5 688 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CMTM2Q8TAZ6 248 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FBXL8Q96CD0 374 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HSFY1Q96LI6 401 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR1F2PQ96R84 312 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SERINC2Q96SA4 455 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SPIN2AQ99865 258 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SPIN2BQ9BPZ2 258 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 WACQ9BTA9 647 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM208Q9BTX3 173 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MED18Q9BUE0 208 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FAM53CQ9NYF3 392 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ERVK-7P63135 1459 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C1orf226A1L170 272 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ARGFXA6NJG6 315 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ELOA3DA6NLF2 546 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GPR25O00155 361 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 XPNPEP2O43895 674 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RECQL4O94761 1208 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 KCNK2O95069 426 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 KNG1P01042 644 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CRYAAP02489 173 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SFTPBP07988 381 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SERPINA2P20848 420 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 DRD5P21918 477 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ENPP1P22413 925 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CPN2P22792 545 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CD82P27701 267 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BDKRB2P30411 391 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GKP32189 559 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PLK1P53350 603 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC18A2Q05940 514 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ELOA3BQ3SY89 546 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TIPARPQ7Z3E1 657 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TP53INP2Q8IXH6 220 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GTPBP8Q8N3Z3 284 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ELOA3Q8NG57 546 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF606Q8WXB4 792 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZBTB8AQ96BR9 441 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CPB2Q96IY4 423 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PCDHB18PQ96TA0 734 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC29A1Q99808 456 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SRRQ9GZT4 340 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 QRSL1Q9H0R6 528 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLCO5A1Q9H2Y9 848 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NT5MQ9NPB1 228 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ABCB8Q9NUT2 735 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM2Q9UHN6 1383 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PRAG1Q86YV5 1406 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TEX13DA0A0J9YY54 714 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0U1RQK1 487 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PRQ8 180 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CILPO75339 1184 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MTX2O75431 263 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 UBBP0CG47 229 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C8orf89P0DMQ9 161 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 VSIG10L2P0DP72 767 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FPR1P21462 350 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SNCAP37840 140 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PBX3P40426 434 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RPS27AP62979 156 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 UBA52P62987 128 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ACTG1P63261 375 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SMAD3P84022 425 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HIST2H3PS2Q5TEC6 136 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MBOAT1Q6ZNC8 495 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM130Q8N3G9 435 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FAM26EQ8N5C1 309 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FBXO15Q8NCQ5 510 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RHEBL1Q8TAI7 183 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms