RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 KLHDC2Q9Y2U9 406 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 FKBP7Q9Y680 259 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CDH10Q9Y6N8 788 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 MTCL1Q9Y4B5 1905 aaKnown RBP1.34□□□□□ -2.2
SCN1A-208ENST00000625916 COL5A1P20908 1838 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 PTPRUQ92729 1446 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 BUB1O43683 1085 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 NME2P1O60361 137 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 AKAP3O75969 853 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 SYNGR4O95473 234 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 IGFBP1P08833 259 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 AREGP15514 252 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 TMOD1P28289 359 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 MARCKSP29966 332 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 PITPNBP48739 271 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 SGSHP51688 502 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 NLRP11P59045 1033 aaKnown RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 GALK2Q01415 458 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 NME3Q13232 169 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 UNC119Q13432 240 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 BTG3Q14201 252 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 ZKSCAN8Q15776 578 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 CYP51A1Q16850 503 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 CMPK2Q5EBM0 449 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 BEND6Q5SZJ8 279 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 ARMC3Q5W041 872 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 OR5M10Q6IEU7 315 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 TMEM270Q6UE05 265 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 CXCL17Q6UXB2 119 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 BNIPLQ7Z465 357 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 PARGQ86W56 976 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 GPBP1Q86WP2 473 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 FAM71E2Q8N5Q1 922 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF615Q8N8J6 731 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 SLC22A8Q8TCC7 542 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 RNASE8Q8TDE3 154 aaKnown RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 C7orf33Q8WU49 177 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 BCL2L2Q92843 193 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 MCHR2Q969V1 340 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 C5orf30Q96GV9 206 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 JAKMIP1Q96N16 626 aaKnown RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 CARD6Q9BX69 1037 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 MRPL9Q9BYD2 267 aaKnown RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 SLC5A7Q9GZV3 580 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 FAM124BQ9H5Z6 455 aaPredicted RBP1.33□□□□□ -2.2
SCN1A-208ENST00000625916 NARFLQ9H6Q4 476 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 PIGVQ9NUD9 493 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 MIOXQ9UGB7 285 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 SLCO1B1Q9Y6L6 691 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 GRIN2DO15399 1336 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 KAT6BQ8WYB5 2073 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 ANKRD30BQ9BXX2 1392 aa1.33□□□□□ -2.2
SCN1A-208ENST00000625916 C5orf51A6NDU8 294 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 E9PLD3 99 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SLC7A4O43246 635 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 RIPK2O43353 540 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 TGDSO95455 350 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 PCCAP05165 728 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF14P17017 642 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 RCC1P18754 421 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 RFC2P35250 354 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 TNNT3P45378 269 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 RPS9P46781 194 aaKnown RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 CSNK1DP48730 415 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 KIAA1024LP59773 190 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ROR1Q01973 937 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 KCNJ11Q14654 390 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SLMAPQ14BN4 828 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 PKN2Q16513 984 aaKnown RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SYPL1Q16563 259 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SMU1Q2TAY7 513 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF57Q68EA5 555 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SLC25A34Q6PIV7 304 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 TOM1L2Q6ZVM7 507 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 SERPINA12Q8IW75 414 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 OR2L8Q8NGY9 312 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 PSMA8Q8TAA3 256 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ST7LQ8TDW4 575 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ARNTL2Q8WYA1 636 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 TMEM45BQ96B21 275 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 C18orf25Q96B23 403 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 TMEM245Q9H330 911 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 MEPEQ9NQ76 525 aaPredicted RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 FAM114A2Q9NRY5 505 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 STARD5Q9NSY2 213 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 DCAF13Q9NV06 445 aaKnown RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 DUS2Q9NX74 493 aaKnown RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 EHFQ9NZC4 300 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 NDUFA13Q9P0J0 144 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 PRPF19Q9UMS4 504 aaKnown RBP1.32□□□□□ -2.2
SCN1A-208ENST00000625916 ERVW-1Q9UQF0 538 aa1.32□□□□□ -2.2
SCN1A-208ENST00000625916 A0A0G2JLM5 398 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NKX2-6A6NCS4 301 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 CCDC69A6NI79 296 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 ZSCAN5BA6NJL1 495 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NPIPB7O75200 414 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 STK17BO94768 372 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 STSP08842 583 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 LHX2P50458 406 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 CCL11P51671 97 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms