RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ELAC2Q9BQ52 826 aaKnown RBP12.3□□□□□ -0.44
LINC00540-202ENST00000616974 SLC39A3Q9BRY0 314 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 PIGUQ9H490 435 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 RUBCNLQ9H714 662 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 CNIH4Q9P003 139 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 MED11Q9P086 117 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 ERRFI1Q9UJM3 462 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-202ENST00000616974 MKLN1Q9UL63 735 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 SLC6A5Q9Y345 797 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 FREM1Q5H8C1 2179 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 FBP2O00757 339 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 CRYABP02511 175 aaKnown RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 IFI6P09912 130 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 ETFAP13804 333 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 EDN3P14138 238 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 NAGAP17050 411 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 DRD4P21917 467 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 MASP1P48740 699 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 MRPL19P49406 292 aaKnown RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 STX1BP61266 288 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 GNGT1P63211 74 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 POU6F2P78424 691 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 SELPLGQ14242 412 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 SQLEQ14534 574 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 MAPK14Q16539 360 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 EMC4Q5J8M3 183 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 OR5M1Q8NGP8 315 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 XAGE5Q8WWM1 108 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 IL1RL2Q9HB29 575 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 SAR1AQ9NR31 198 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 PCDHGB4Q9UN71 923 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 WIF1Q9Y5W5 379 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 ANKRD33BA6NCL7 494 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 GDF1P27539 372 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 CHI3L1P36222 383 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 WIPI1Q5MNZ9 446 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 TIGD3Q6B0B8 471 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 TRILQ7L0X0 811 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 ANKFN1Q8N957 763 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 OR5M9Q8NGP3 310 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 DUSP19Q8WTR2 217 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 MAL2Q969L2 176 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 SH3YL1Q96HL8 342 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 SDF2Q99470 211 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 BTBD2Q9BX70 525 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 DUSP22Q9NRW4 184 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 FAM53CQ9NYF3 392 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 FAF1Q9UNN5 650 aaPredicted RBP12.29□□□□□ -0.44
LINC00540-202ENST00000616974 AKAP6Q13023 2319 aa12.29□□□□□ -0.44
LINC00540-202ENST00000616974 NPIPA2E9PIF3 369 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 NPIPA3F8WFD2 350 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 KCNH1O95259 989 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TROVE2P10155 538 aaKnown RBP eCLIP12.28□□□□□ -0.44
LINC00540-202ENST00000616974 KRT20P35900 424 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 PRIM2P49643 509 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TOMM20Q15388 145 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 CBLN3Q6UW01 205 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 DLEU7Q6UYE1 221 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 FJX1Q86VR8 437 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 POU5F2Q8N7G0 328 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 FAM98AQ8NCA5 519 aaKnown RBP12.28□□□□□ -0.44
LINC00540-202ENST00000616974 VPS37AQ8NEZ2 397 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 ZNF597Q96LX8 424 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TPT1P8Q9HAU6 139 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 PLSCR2Q9NRY7 297 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 KLHL14Q9P2G3 628 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 C15orf41Q9Y2V0 281 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 ALPK2Q86TB3 2170 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TRBV5-3A0A0A0MS03 114 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 SNPHO15079 494 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 SLC19A2O60779 497 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TRAPPC6AO75865 159 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 ANGPTL1O95841 491 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 CHRM4P08173 479 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 CAPRIN1Q14444 709 aaKnown RBP12.28□□□□□ -0.44
LINC00540-202ENST00000616974 CDSNQ15517 529 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 GPR68Q15743 365 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 HYAL4Q2M3T9 481 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 RPS26P11Q5JNZ5 115 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-202ENST00000616974 ARSKQ6UWY0 536 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 PACS2Q86VP3 889 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 TREML1Q86YW5 311 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 FAM109AQ8N4B1 249 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 NATD1Q8N6N6 113 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 STACQ99469 402 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 DSN1Q9H410 356 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 RPH3AQ9Y2J0 694 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-202ENST00000616974 APCP25054 2843 aa12.28□□□□□ -0.44
LINC00540-202ENST00000616974 MAST4O15021 2626 aa12.27□□□□□ -0.44
LINC00540-202ENST00000616974 LOC100653049A0A140TA62 436 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 CAPN14A8MX76 684 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 H0YC42 278 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 LRRTM2O43300 516 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 ADAM11O75078 769 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 TNFRSF21O75509 655 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 KRT34O76011 436 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 ATP4BP51164 291 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 TPD52P55327 224 aaPredicted RBP12.27□□□□□ -0.45
LINC00540-202ENST00000616974 CHRNEQ04844 493 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 PDZK1Q5T2W1 519 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms