RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SYNPO2LQ9H987 977 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 PPP4R1LQ9P1A2 415 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 KLHL9Q9P2J3 617 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 KCNIP3Q9Y2W7 256 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 CACNA1SQ13698 1873 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 SEMA4FO95754 770 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 ARAFP10398 606 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 FUT1P19526 365 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 FBLP22087 321 aaKnown RBP13.2□□□□□ -0.3
CPSF1-212ENST00000616140 CHMP24386 653 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 MAMDC2Q7Z304 686 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-212ENST00000616140 HORMAD2Q8N7B1 307 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 ALOXE3Q9BYJ1 711 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 TPSD1Q9BZJ3 242 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.2□□□□□ -0.37e-9■■■■□ 19.6
CPSF1-212ENST00000616140 TUBB1Q9H4B7 451 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 LDB3O75112 727 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 HNRNPA2B1P22626 353 aaKnown RBP13.2□□□□□ -0.3
CPSF1-212ENST00000616140 PITPNBP48739 271 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 DEDD2Q8WXF8 326 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 MR1Q95460 341 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 KATNBL1Q9H079 304 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 RDH16O75452 317 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 CA3P07451 260 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 C1SP09871 688 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 IMPA1P29218 277 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 TSC22D1Q15714 1073 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 CHRFAM7AQ494W8 412 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 OR2G6Q5TZ20 316 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 TMEM207Q6UWW9 146 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 PELI3Q8N2H9 469 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 SDR9C7Q8NEX9 313 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 OR4C15Q8NGM1 316 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 OR2A12Q8NGT7 310 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 OR5W2Q8NH69 310 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 BPIFA2Q96DR5 249 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 PITX2Q99697 317 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 AP1M2Q9Y6Q5 423 aa13.2□□□□□ -0.3
CPSF1-212ENST00000616140 RAD1O60671 282 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 AMY2AP04746 511 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 MTHFD2P13995 350 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 CEBPBP17676 345 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 HOXC13P31276 330 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PIP5KL1Q5T9C9 394 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 NLGN4XQ8N0W4 816 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 OR8J2Q8NGG1 315 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PGAM5Q96HS1 289 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SERINC2Q96SA4 455 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 APOOQ9BUR5 198 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 OR52D1Q9H346 318 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PCDHB16Q9NRJ7 776 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 TAS2R8Q9NYW2 309 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 VSTM2BA6NLU5 285 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 NPIPA2E9PIF3 369 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 NPIPA3F8WFD2 350 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 H0YIV9 168 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 DUX1O43812 170 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PRAMEF2O60811 474 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 DAPP51397 102 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SGSHP51688 502 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PRDX1Q06830 199 aaKnown RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 TMEM205Q6UW68 189 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 OR5AK2Q8NH90 309 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 ELP5Q8TE02 316 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 CDS1Q92903 461 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 GAL3ST3Q96A11 431 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SAMD11Q96NU1 681 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 A0A0A6YYC8 382 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 I3L1I5 382 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF16P17020 682 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 UQCRC1P31930 480 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 TAP2Q03519 686 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 ACSM3Q53FZ2 586 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 MTFR2Q6P444 385 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 P4HA3Q7Z4N8 544 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SERPINA12Q8IW75 414 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 OR13F1Q8NGS4 319 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 RTP3Q9BQQ7 232 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 CD300AQ9UGN4 299 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 C4AP0C0L4 1744 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 MEIOCA2RUB1 952 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 EEF1E1-BLOC1S5C9J1V9 151 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SDC3O75056 442 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 SNAPC5O75971 98 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 ERCC1P07992 297 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 IGFBP6P24592 240 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 RAB11BQ15907 218 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PDSS1Q5T2R2 415 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 DNAJC22Q8N4W6 341 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PARP16Q8N5Y8 322 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 TOR1AIP2Q8NFQ8 470 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 OR4F15Q8NGB8 312 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF486Q96H40 463 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 GPR78Q96P69 363 aa13.19□□□□□ -0.3
CPSF1-212ENST00000616140 TSNAXQ99598 290 aaKnown RBP13.19□□□□□ -0.3
CPSF1-212ENST00000616140 PCSK6P29122 969 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 PRSS3P35030 304 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 ACTBP60709 375 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 ACTG1P63261 375 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms