RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SLAMF8Q9P0V8 285 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 TNFRSF10DQ9UBN6 386 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 KCNE5Q9UJ90 142 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 TINAGQ9UJW2 476 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 MRTO4Q9UKD2 239 aaKnown RBP17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 PCDHGB4Q9UN71 923 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 FAF1Q9UNN5 650 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 HECTD1Q9ULT8 2610 aa17.76■□□□□ 0.43
SHKBP1-221ENST00000599833 CENPVL1A0A0U1RR11 272 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 SCO2O43819 266 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 HCN1O60741 890 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 KRT16P08779 473 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 GDF1P27539 372 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 PSMD4P55036 377 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 STX1BP61266 288 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 UBAP2LQ14157 1087 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 EIPR1Q53HC9 387 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 COX20Q5RI15 118 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 TNFAIP8L2Q6P589 184 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 DNAJC14Q6Y2X3 702 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 OR2M3Q8NG83 312 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 C10orf82Q8WW14 230 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 OR2B2Q9GZK3 357 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 ZNF350Q9GZX5 532 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 SLC25A37Q9NYZ2 338 aa17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 PHF3Q92576 2039 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-221ENST00000599833 ICE1Q9Y2F5 2266 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 HEATR5AQ86XA9 2040 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 SPTBN1Q01082 2364 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 TRGV5A0A0B4J1U4 118 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 NPIPA5A0A0B4J1W7 369 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 NPIPA7E9PJI5 369 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 HMGN4O00479 90 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 RFXANKO14593 260 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 LRRTM2O43300 516 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 ZIC3O60481 467 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 FCMRO60667 390 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 GUSBP08236 651 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 VIMP08670 466 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 NPIPA8P0DM63 369 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 OR12D1P0DN82 309 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 PTGS2P35354 604 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 MASP1P48740 699 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 CD226Q15762 336 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 ARHGAP11BQ3KRB8 267 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 AGKQ53H12 422 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 LRIF1Q5T3J3 769 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 METTL21CQ5VZV1 264 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 ZNF621Q6ZSS3 439 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 RNF130Q86XS8 419 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 FAM83FQ8NEG4 500 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 NEIL3Q8TAT5 605 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 RAB8BQ92930 207 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 SPDL1Q96EA4 605 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 AURKBQ96GD4 344 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 G6PC3Q9BUM1 346 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 SLC5A6Q9Y289 635 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 PCDHB14Q9Y5E9 798 aa17.74■□□□□ 0.43
SHKBP1-221ENST00000599833 KIAA1549Q9HCM3 1950 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 A0A1W2PQD3 144 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 OR14I1A6ND48 311 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 CBR3O75828 277 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 SOX30O94993 753 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 ANGPTL1O95841 491 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 TRPC1P48995 793 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 B3GALT5-AS1P59052 145 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 PLAURQ03405 335 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 RBPJQ06330 500 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 CRYZQ08257 329 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 SF3A3Q12874 501 aaKnown RBP eCLIP17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 KLHL26Q53HC5 615 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 NHSL2Q5HYW2 709 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 DCST1Q5T197 706 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 ITCHQ96J02 903 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 DMRTA2Q96SC8 542 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 SAP130Q9H0E3 1048 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 UBQLN4Q9NRR5 601 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 KLHL14Q9P2G3 628 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 B4GALT7Q9UBV7 327 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 MRPS18CQ9Y3D5 142 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 GMEB1Q9Y692 573 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 CRYBG3Q68DQ2 2970 aa17.73■□□□□ 0.43
SHKBP1-221ENST00000599833 FLNBO75369 2602 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 ARHGAP21Q5T5U3 1957 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 DUXAA6NLW8 204 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 NR5A2O00482 541 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 OIP5O43482 229 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 TROVE2P10155 538 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 DCTP40126 519 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 ARFIP2P53365 341 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 GYS2P54840 703 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 GFRA1P56159 465 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 WIPI1Q5MNZ9 446 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 RTL6Q6ICC9 239 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 TYW3Q6IPR3 259 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 NCCRP1Q6ZVX7 275 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 YRDCQ86U90 279 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 CD163Q86VB7 1156 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 RETREG3Q86VR2 466 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms