RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 KCNK2O95069 426 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 IGKV1D-16P01601 117 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CHRM4P08173 479 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ITGAMP11215 1152 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 GGT1P19440 569 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 DCAF7P61962 342 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CDK6Q00534 326 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 RBBP4Q09028 425 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 TRAP1Q12931 704 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 EXT1Q16394 746 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ARHGAP11BQ3KRB8 267 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 GLYATQ6IB77 296 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 H3F3CQ6NXT2 135 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ERICH5Q6P6B1 374 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 HSDL2Q6YN16 418 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 C16orf47Q6ZP98 133 aaPredicted RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ZAR1Q86SH2 424 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 PRIMA1Q86XR5 153 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 RAB43Q86YS6 212 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 TGIF2LYQ8IUE0 185 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 SLC44A2Q8IWA5 706 aaPredicted RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 RBMXL3Q8N7X1 1067 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 C11orf65Q8NCR3 313 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 FAM13CQ8NE31 585 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CHDHQ8NE62 594 aaPredicted RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 NFKBIDQ8NI38 313 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 NUBPLQ8TB37 319 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 GPR151Q8TDV0 419 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 WDR60Q8WVS4 1066 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 JADE3Q92613 823 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CCDC124Q96CT7 223 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ZG16BQ96DA0 208 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 LCORQ96JN0 433 aaPredicted RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 LMF1Q96S06 567 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 SDF2Q99470 211 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 BTBD2Q9BX70 525 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 NXF5Q9H1B4 397 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 THUMPD1Q9NXG2 353 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 SUCOQ9UBS9 1254 aaKnown RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 COPS7AQ9UBW8 275 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 MXRA5Q9NR99 2828 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CACNA1CQ13936 2221 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 FRG2CA6NGY1 282 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TTC36A6NLP5 189 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TMEM229AB2RXF0 380 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CXCR6O00574 342 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PEX12O00623 359 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ARPC2O15144 300 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TO15178 435 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 MAN1A2O60476 641 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 SOX30O94993 753 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PGM3O95394 542 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ICAM2P13598 275 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TRHRP34981 398 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PCGF2P35227 344 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PIGAP37287 484 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 NR0B1P51843 470 aaKnown RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CRYBA2P53672 197 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PCBP3P57721 371 aaKnown RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 POU6F2P78424 691 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 MRPS22P82650 360 aaKnown RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CHRNEQ04844 493 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 BNIP2Q12982 314 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 SCARB2Q14108 478 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 VEZF1Q14119 521 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ZNHIT3Q15649 155 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 NNATQ16517 81 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF630Q2M218 657 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PLEKHN1Q494U1 663 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CYP27C1Q4G0S4 372 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 DCST2Q5T1A1 773 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CCNJQ5T5M9 372 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 REEP3Q6NUK4 255 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 FIGNL1Q6PIW4 674 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 LRRC74BQ6ZQY2 392 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CCDC80Q76M96 950 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 SLC29A4Q7RTT9 530 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 GALNT10Q86SR1 603 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ARMC10Q8N2F6 343 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 METTL25Q8N6Q8 603 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 BCORP1Q8N888 145 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ST6GALNAC3Q8NDV1 305 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 C17orf47Q8NEP4 570 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 THAP3Q8WTV1 239 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PSMF1Q92530 271 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 FIG4Q92562 907 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TP53INP1Q96A56 240 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ASB9Q96DX5 294 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TMEM19Q96HH6 336 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 IP6K3Q96PC2 410 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 TRNT1Q96Q11 434 aaKnown RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 RAB3IPQ96QF0 476 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-208ENST00000597172 GAL3ST4Q96RP7 486 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 DEFB126Q9BYW3 111 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 SAP130Q9H0E3 1048 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 SLC38A1Q9H2H9 487 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 GORASP2Q9H8Y8 452 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 BCL2L10Q9HD36 194 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 EXD2Q9NVH0 621 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 ACTR3BQ9P1U1 418 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms