RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF841Q6ZN19 808 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 CNGA4Q8IV77 575 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 VSTM4Q8IW00 320 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 OFCC1Q8IZS5 231 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 LRRC75A-AS1Q8N1F1 130 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 CLIP4Q8N3C7 705 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 DRAXINQ8NBI3 349 aaPredicted RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 OR9K2Q8NGE7 335 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 SPATA22Q8NHS9 363 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 OLIG1Q8TAK6 271 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 RPL3LQ92901 407 aaKnown RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 VSTM2LQ96N03 204 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 INPP4AQ96PE3 977 aaPredicted RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 POLR3CQ9BUI4 534 aaPredicted RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 RBM24Q9BX46 236 aaKnown RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 NLNQ9BYT8 704 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 KAT8Q9H7Z6 458 aaKnown RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 CHST11Q9NPF2 352 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 ZMAT5Q9UDW3 170 aaKnown RBP5.14□□□□□ -1.59
VPS53-219ENST00000576019 SEC14L3Q9UDX4 400 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 MIOXQ9UGB7 285 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 IFT52Q9Y366 437 aa5.14□□□□□ -1.59
VPS53-219ENST00000576019 A0A1W2PN81 502 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 OR2AG2A6NM03 316 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 FOXE1O00358 373 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 FPGTO14772 594 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 MID1O15344 667 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 B4GAT1O43505 415 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 FCMRO60667 390 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 JAK2O60674 1132 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 WBP4O75554 376 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 EML2O95834 649 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 MT-ND2P03891 347 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 S100A9P06702 114 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 SLC2A3P11169 496 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 CDK4P11802 303 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 CPN1P15169 458 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 TPSB2P20231 275 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 GPX3P22352 226 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 RBMS1P29558 406 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 CHRNA7P36544 502 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 SYKP43405 635 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 BRWD1-AS2P59051 145 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 SEC61A1P61619 476 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 DYNLL1P63167 89 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 PITX1P78337 314 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 GPR50Q13585 617 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ITGA9Q13797 1035 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ELAVL3Q14576 367 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 HERC3Q15034 1050 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 TPSAB1Q15661 275 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PDLIM3Q53GG5 364 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 TDRD12Q587J7 1177 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 C10orf120Q5SQS8 335 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 FNBP1LQ5T0N5 605 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 HES3Q5TGS1 186 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PRAMEF5Q5TYX0 476 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PRAMEF6Q5VXH4 476 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 CYP4V2Q6ZWL3 525 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 CENPUQ71F23 418 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 G2E3Q7L622 706 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PIWIL4Q7Z3Z4 852 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 CDR2LQ86X02 465 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 WDR49Q8IV35 697 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 EFCAB13Q8IY85 973 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ZNF683Q8IZ20 524 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PARP8Q8N3A8 854 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 OR1J1Q8NGS3 322 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 OR13C5Q8NGS8 318 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 SLC22A8Q8TCC7 542 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 SLC2A14Q8TDB8 520 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 GRHL3Q8TE85 626 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 DNAJB3Q8WWF6 145 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 TMEM37Q8WXS4 190 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ING5Q8WYH8 240 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PIK3R3Q92569 461 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 COQ8BQ96D53 544 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 URB1-AS1Q96HZ7 61 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 NDUFAF3Q9BU61 184 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ROPN1BQ9BZX4 212 aaPredicted RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 DCLK3Q9C098 648 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 PLAC1Q9HBJ0 212 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ZFP14Q9HCL3 533 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 FZD3Q9NPG1 666 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 TECRQ9NZ01 308 aaKnown RBP5.13□□□□□ -1.59
VPS53-219ENST00000576019 SPATA7Q9P0W8 599 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 EPHA6Q9UF33 1036 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 ZDHHC2Q9UIJ5 367 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 GRID1Q9ULK0 1009 aa5.13□□□□□ -1.59
VPS53-219ENST00000576019 LILRA5A6NI73 299 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 LINC01548A6NM66 108 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 YJEFN3A6XGL0 299 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 SRRM4A7MD48 611 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 KIF2AO00139 706 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 ZSCAN12O43309 604 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 NDUFA7O95182 113 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 CLDN14O95500 239 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 HPRP00739 348 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 LGALS2P05162 132 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 CAPN1P07384 714 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms