RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-209ENST00000573474 KCNE5Q9UJ90 142 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ENPP4Q9Y6X5 453 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PTPRZ1P23471 2315 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-209ENST00000573474 CDC14CA4D256 554 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 DNAJB5O75953 348 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 EPPINO95925 133 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 HPP00738 406 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 ICAM2P13598 275 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 RHCEP18577 417 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 IL12BP29460 328 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 DCTP40126 519 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 PLCXD2Q0VAA5 305 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 CAMK2BQ13554 666 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 LRRC36Q1X8D7 754 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 GRAMD1BQ3KR37 738 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 PDZK1Q5T2W1 519 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 RNF220Q5VTB9 566 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF836Q6ZNA1 936 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 COMTD1Q86VU5 262 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 CYP4Z1Q86W10 505 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 CLIP4Q8N3C7 705 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 AMER2Q8N7J2 671 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 KIAA1143Q96AT1 154 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-209ENST00000573474 EFHD2Q96C19 240 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-209ENST00000573474 OMA1Q96E52 524 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 C9orf16Q9BUW7 83 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 UBQLN4Q9NRR5 601 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 CHST2Q9Y4C5 530 aa12.62□□□□□ -0.39
CCDC40-209ENST00000573474 PTPRBP23467 1997 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CNOT1A5YKK6 2376 aaKnown RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CENPVL1A0A0U1RR11 272 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 SAC3D1A6NKF1 404 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 TMEM200CA6NKL6 621 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 M0R3H8 397 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ADAMDEC1O15204 470 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 HS6ST1O60243 411 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 TSPAN2O60636 221 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 DIRAS1O95057 198 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 UTS2O95399 124 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ABCD3P28288 659 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 PNLIPRP2P54317 469 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ZBTB49Q6ZSB9 765 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CMIPQ8IY22 773 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 PRR22Q8IZ63 422 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 SVOPLQ8N434 492 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF527Q8NB42 609 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 OR4D11Q8NGI4 311 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 OR4C3Q8NH37 302 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 OR5K1Q8NHB7 308 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 VANGL1Q8TAA9 524 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 THAP3Q8WTV1 239 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 IP6K3Q96PC2 410 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ADOQ96SZ5 270 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 PIP5K1AQ99755 562 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CIB1Q99828 191 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 REEP1Q9H902 201 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 GPN2Q9H9Y4 310 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 LIN28AQ9H9Z2 209 aaKnown RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF160Q9HCG1 818 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 C8orf4Q9NR00 106 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 P4HTMQ9NXG6 502 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 MYOTQ9UBF9 498 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 FBXL4Q9UKA2 621 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CNOT11Q9UKZ1 510 aaKnown RBP12.61□□□□□ -0.39
CCDC40-209ENST00000573474 OAZ3Q9UMX2 235 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 DTNAQ9Y4J8 743 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 NPFFR2Q9Y5X5 522 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 AK5Q9Y6K8 562 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CEP250Q9BV73 2442 aa12.61□□□□□ -0.39
CCDC40-209ENST00000573474 CDHR4A6H8M9 788 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 OR6C70A6NIJ9 312 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 CLDN24A6NM45 220 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 WWP2O00308 870 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 ABCB7O75027 752 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 E2F6O75461 281 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 PPM1BO75688 479 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 LIPCP11150 499 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 CYP4B1P13584 511 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 HPGDP15428 266 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF23P17027 643 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 NAGAP17050 411 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 TBXA2RP21731 343 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 DNAJA1P31689 397 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 YAP1P46937 504 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 RGS8P57771 180 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 IL10RAQ13651 578 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 EFR3AQ14156 821 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 GK3PQ14409 553 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 FGFBP1Q14512 234 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 KLHL26Q53HC5 615 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 MRPL2Q5T653 305 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 PPP4R4Q6NUP7 873 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 TCTN3Q6NUS6 607 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 DEF8Q6ZN54 512 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 MRGPREQ86SM8 312 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 HIPK1Q86Z02 1210 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 RBM45Q8IUH3 476 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 ZDHHC13Q8IUH4 622 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 GRAMD2AQ8IUY3 354 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms