RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 NKX2-6A6NCS4 301 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 FAM47E-STBD1D6RA91 191 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 UPK1AO00322 258 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 LSM1O15116 133 aaKnown RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 SHOXO15266 292 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 PRODHO43272 600 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 CTIFO43310 598 aaKnown RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 AKAP10O43572 662 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TYROBPO43914 113 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TSPAN2O60636 221 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 COQ9O75208 318 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TOXO94900 526 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 KCNH1O95259 989 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 EPPINO95925 133 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NEFHP12036 1026 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 CREB1P16220 341 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 BMP7P18075 431 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 IL12BP29460 328 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NTSP30990 170 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SERPINB5P36952 375 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 MC3RP41968 323 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SUMO1P63165 101 aaKnown RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 MRPS22P82650 360 aaKnown RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 PSG6Q00889 435 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 GAB1Q13480 694 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 EFR3AQ14156 821 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SF3B4Q15427 424 aaKnown RBP eCLIP6.77□□□□□ -1.33
NUP88-205ENST00000572809 GALNTL6Q49A17 601 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 EIPR1Q53HC9 387 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NHSL2Q5HYW2 709 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SH2D4BQ5SQS7 431 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 FOXB2Q5VYV0 432 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 VASNQ6EMK4 673 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TMEM107Q6UX40 140 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NPSR1Q6W5P4 371 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 MEX3BQ6ZN04 569 aaKnown RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 ZCCHC23Q6ZST2 131 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 LARP4Q71RC2 724 aaKnown RBP eCLIP6.77□□□□□ -1.33
NUP88-205ENST00000572809 GDF7Q7Z4P5 450 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 DDIASQ8IXT1 998 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 PM20D2Q8IYS1 436 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 ULK2Q8IYT8 1036 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 MREGQ8N565 214 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 WDSUB1Q8N9V3 476 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 OR4N2Q8NGD1 307 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TWIST2Q8WVJ9 160 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NINJ1Q92982 152 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 ABTB1Q969K4 478 aaPredicted RBP6.77□□□□□ -1.33
NUP88-205ENST00000572809 ELP4Q96EB1 424 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SLC35A4Q96G79 324 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 FCRL1Q96LA6 429 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 AMDHD1Q96NU7 426 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 REEP4Q9H6H4 257 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 GALNT9Q9HCQ5 603 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 SH3BP4Q9P0V3 963 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 Q9UFV3 132 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 BAIAP2L1Q9UHR4 511 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 MAPRE3Q9UPY8 281 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 TMED5Q9Y3A6 229 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 OR10H1Q9Y4A9 318 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NOTCH2Q04721 2471 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 NCKAP5O14513 1909 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 CELSR2Q9HCU4 2923 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 PRAMEF25A6NGN4 478 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 FAM90A27PA6NNH2 459 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 HSPB2A8KAH6 182 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 TMEM114B3SHH9 223 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 TMEM233B4DJY2 109 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 PIP5K1BO14986 540 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 RGS16O15492 202 aaPredicted RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 TBX19O60806 448 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 PEX11AO75192 247 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 ACTL6AO96019 429 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 TUBBP07437 444 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 BPGMP07738 259 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 IFI6P09912 130 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 PRPS2P11908 318 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 BCKDHAP12694 445 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 CYP4B1P13584 511 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 SDC1P18827 310 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 GCKP35557 465 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 ASMTP46597 345 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 MANFP55145 182 aaKnown RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 RPL38P63173 70 aaKnown RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 CRYZQ08257 329 aaKnown RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 ZNF155Q12901 538 aaPredicted RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 ZNHIT3Q15649 155 aaPredicted RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 HSPB2Q16082 182 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 DECR1Q16698 335 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 KRT71Q3SY84 523 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 RIPPLY2Q5TAB7 128 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 OR5M10Q6IEU7 315 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 ANKRD26P1Q6NSI1 321 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 LRIG3Q6UXM1 1119 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 ZNF551Q7Z340 670 aaPredicted RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 R3HCC1LQ7Z5L2 792 aaKnown RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 ZAR1Q86SH2 424 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 YRDCQ86U90 279 aaKnown RBP6.76□□□□□ -1.33
NUP88-205ENST00000572809 PLCZ1Q86YW0 608 aa6.76□□□□□ -1.33
NUP88-205ENST00000572809 LIX1LQ8IVB5 337 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms