RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RSPO4Q2I0M5 234 aaPredicted RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 FLYWCH1Q4VC44 716 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 OGFRL1Q5TC84 451 aaPredicted RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 DHRS4L2Q6PKH6 230 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 KIRREL2Q6UWL6 708 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 TSEN54Q7Z6J9 526 aaKnown RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 COMTD1Q86VU5 262 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 ZNF441Q8N8Z8 693 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 ICA1LQ8NDH6 482 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 C17orf47Q8NEP4 570 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 GPR87Q9BY21 358 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 FAM117AQ9C073 453 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 NRSN2Q9GZP1 204 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 ZNF696Q9H7X3 374 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 NTN4Q9HB63 628 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 THSD1Q9NS62 852 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 NDUFAF4Q9P032 175 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 KCNE5Q9UJ90 142 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 RAB26Q9ULW5 256 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 ZNF232Q9UNY5 417 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 ZNF443Q9Y2A4 671 aaPredicted RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 NPIPA5A0A0B4J1W7 369 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 CENPVL1A0A0U1RR11 272 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 LOC101059948A0A1B0GTJ6 334 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 A0A1W2PQ72 361 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 CDC14CA4D256 554 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 NPIPA7E9PJI5 369 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 SYT5O00445 386 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 PEX12O00623 359 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 SOCS6O14544 535 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 GNGT2O14610 69 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 TERTO14746 1132 aaKnown RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 TO15178 435 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 ACOX3O15254 700 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 UGT2B17O75795 530 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 DIRAS1O95057 198 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 PRSS23O95084 383 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 TNFAIP8O95379 198 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 IL33O95760 270 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 EPPINO95925 133 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 LGI1O95970 557 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 IFNW1P05000 195 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 THBS1P07996 1170 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 NPIPA8P0DM63 369 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 ITGA2P17301 1181 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 RPS4Y1P22090 263 aaKnown RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 F8A1P23610 371 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 LARS2Q15031 903 aaKnown RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 MAPK14Q16539 360 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 OR2T5Q6IEZ7 315 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 IGF2-ASQ6U949 168 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 UGT2A3Q6UWM9 527 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 PPP1R32Q7Z5V6 425 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 CARM1Q86X55 608 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 OR11G2Q8NGC1 345 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 OR2T29Q8NH02 315 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 OR8K3Q8NH51 312 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 NUBPLQ8TB37 319 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 NKD1Q969G9 470 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 TMBIM1Q969X1 311 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 TP53INP1Q96A56 240 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 EME1Q96AY2 570 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 HSPBAP1Q96EW2 488 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 VPS50Q96JG6 964 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 IMMP1LQ96LU5 166 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 ZNF300Q96RE9 604 aaPredicted RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 LMF1Q96S06 567 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 AMBRA1Q9C0C7 1298 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 MRTO4Q9UKD2 239 aaKnown RBP10.36□□□□□ -0.75
USP3-218ENST00000560202 SLC13A4Q9UKG4 626 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 CHST2Q9Y4C5 530 aa10.36□□□□□ -0.75
USP3-218ENST00000560202 SAC3D1A6NKF1 404 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 ZFAND5O76080 213 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 CLPTM1O96005 669 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 NID1P14543 1247 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 OTX2P32243 289 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 DCTP40126 519 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 CD97P48960 835 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 PSMD4P55036 377 aaKnown RBP10.35□□□□□ -0.75
USP3-218ENST00000560202 EEF1A1P68104 462 aaKnown RBP10.35□□□□□ -0.75
USP3-218ENST00000560202 PSPHP78330 225 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 EXT1Q16394 746 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 BTBD16Q32M84 506 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 GRAMD1BQ3KR37 738 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 ZNF836Q6ZNA1 936 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 NDUFAF7Q7L592 441 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 CLIP4Q8N3C7 705 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 OR4D11Q8NGI4 311 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 OR5L2Q8NGL0 311 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 VANGL1Q8TAA9 524 aaPredicted RBP10.35□□□□□ -0.75
USP3-218ENST00000560202 ELP5Q8TE02 316 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 NACC2Q96BF6 587 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 EFHD2Q96C19 240 aaPredicted RBP10.35□□□□□ -0.75
USP3-218ENST00000560202 ZNF347Q96SE7 839 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 WFDC6Q9BQY6 131 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 OCEL1Q9H607 264 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 LIN28AQ9H9Z2 209 aaKnown RBP10.35□□□□□ -0.75
USP3-218ENST00000560202 ASCL3Q9NQ33 180 aa10.35□□□□□ -0.75
USP3-218ENST00000560202 KLHL28Q9NXS3 571 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms