RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TMEM245Q9H330 911 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 POLMQ9NP87 494 aaPredicted RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 A4GALTQ9NPC4 353 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TNFRSF10DQ9UBN6 386 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 IL36AQ9UHA7 158 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 KLHL21Q9UJP4 597 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 MAFFQ9ULX9 164 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TRBV23OR9-2A0A075B6M9 112 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 A0A1W2PRQ8 180 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 OR52A4PA6NMU1 304 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CHST10O43529 356 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SSNA1O43805 119 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PCCBP05166 539 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ANKRD34CP0C6C1 535 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CLDN12P56749 244 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RAB40BQ12829 278 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ADAM15Q13444 863 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PLEKHM3Q6ZWE6 761 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 C12orf40Q86WS4 652 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 FAM129CQ86XR2 697 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PLCZ1Q86YW0 608 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 LRRC56Q8IYG6 542 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 ARIH2OSQ8N7S6 290 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 OR51A7Q8NH64 312 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RASSF5Q8WWW0 418 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CXorf40BQ96DE9 158 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 DNAJA3Q96EY1 480 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 AMDHD1Q96NU7 426 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SLC38A2Q96QD8 506 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZNF559Q9BR84 538 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 GPR174Q9BXC1 333 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 GSDMCQ9BYG8 508 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 MS4A7Q9GZW8 240 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 AICDAQ9GZX7 198 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.53□□□□□ -0.561e-12■□□□□ 9.5
LDLR-205ENST00000557933 H2AFY2Q9P0M6 372 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 SPATA2Q9UM82 520 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PLEKHM1Q9Y4G2 1056 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 OR1A2Q9Y585 309 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 KIF26AQ9ULI4 1882 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 THY1P04216 161 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 HLA-DPB1P04440 258 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 MMP12P39900 470 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CLCNKAP51800 687 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 EPHA5P54756 1037 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RGS8P57771 180 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 FZD5Q13467 585 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 TNK1Q13470 666 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ESCO2Q56NI9 601 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZBTB37Q5TC79 503 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZNF614Q8N883 585 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PFN4Q8NHR9 129 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RFT1Q96AA3 541 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CPEB1Q9BZB8 566 aaKnown RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZFP64Q9NPA5 681 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SLCO1C1Q9NYB5 712 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 OR6C2Q9NZP2 312 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 TMEM5Q9Y2B1 443 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PPIL1Q9Y3C6 166 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 TEX13CA0A0J9YWL9 993 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SLC9B1P1A6NJY1 282 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 NDUFS4O43181 175 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 HCN1O60741 890 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SLC22A5O76082 557 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZIC2O95409 532 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 LGI1O95970 557 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 HPXP02790 462 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 TRAPPC2P0DI81 140 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 TRAPPC2BP0DI82 140 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 NAT1P18440 290 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CERS1P27544 350 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 GRPRP30550 384 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 BTCP35070 178 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 PCDH1Q08174 1060 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 DSG2Q14126 1118 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 C1orf94Q6P1W5 598 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 CEACAM19Q7Z692 300 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 SIAH3Q8IW03 269 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 ZNF527Q8NB42 609 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 FBXO15Q8NCQ5 510 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 CNRIP1Q96F85 164 aaPredicted RBP11.53□□□□□ -0.56
LDLR-205ENST00000557933 LMLNQ96KR4 655 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 FUZQ9BT04 418 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RBCK1Q9BYM8 510 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 RETREG1Q9H6L5 497 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 NANSQ9NR45 359 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 C20orf141Q9NUB4 165 aa11.53□□□□□ -0.56
LDLR-205ENST00000557933 A8MVJ9 347 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 MPC2O95563 127 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 OLFM2O95897 454 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 C6P13671 934 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 TALDO1P37837 337 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 PER3P56645 1201 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 OR12D2P58182 307 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 SIM1P81133 766 aaPredicted RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 SF3A2Q15428 464 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 GPR68Q15743 365 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 MINDY4Q4G0A6 757 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 GXYLT1Q4G148 440 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 ENTPD8Q5MY95 495 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms