RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GALNT12Q8IXK2 581 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 VWA5B2Q8N398 1253 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 SLC5A8Q8N695 610 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 C9orf43Q8TAL5 461 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 NDNFQ8TB73 568 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 SLC9A6Q92581 669 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 MYDGFQ969H8 173 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 ANKRD9Q96BM1 317 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 RBM18Q96H35 190 aaKnown RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 CRELD1Q96HD1 420 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 BARD1Q99728 777 aaKnown RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 ARHGDIGQ99819 225 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 DPYSL5Q9BPU6 564 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 CCDC90BQ9GZT6 254 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 DCSTAMPQ9H295 470 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 UCKL1Q9NWZ5 548 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 GMEB2Q9UKD1 530 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 WDR45Q9Y484 360 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 PCDHGB2Q9Y5G2 931 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 FOXS1O43638 330 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 MITFO75030 526 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 ELAVL4P26378 380 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 EPHA8P29322 1005 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 FNTBP49356 437 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CLK3P49761 638 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CDC42P60953 191 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 RPP38P78345 283 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 DUSP8Q13202 625 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 GANABQ14697 944 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 LAPTM4AQ15012 233 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 STEAP3Q658P3 488 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CCDC103Q8IW40 242 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR4N5Q8IXE1 308 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 GPR135Q8IZ08 494 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF619Q8N2I2 560 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 COX18Q8N8Q8 333 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SLC16A11Q8NCK7 471 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 IL17RDQ8NFM7 739 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR5T3Q8NGG3 340 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR6F1Q8NGZ6 308 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR52P1PQ8NH57 321 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 VANGL1Q8TAA9 524 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OIT3Q8WWZ8 545 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 HOXB13Q92826 284 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SLC35A4Q96G79 324 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR1F2PQ96R84 312 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF350Q9GZX5 532 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SAP130Q9H0E3 1048 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 KRCC1Q9NPI7 259 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 PRTFDC1Q9NRG1 225 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 STARD5Q9NSY2 213 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CFL2Q9Y281 166 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 MMACHCQ9Y4U1 282 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 NCOR1O75376 2440 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 A0A0A6YYC8 382 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 IGHV5-51A0A0C4DH38 117 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 A0A1W2PS29 197 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 I3L1I5 382 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 J3KTA2 159 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 AP3D1O14617 1153 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 RPLP0P05388 317 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 DBIP07108 87 aaKnown RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 YES1P07947 543 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CD36P16671 472 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 GSTM3P21266 225 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 HTR3AP46098 478 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 GFERP55789 205 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 POU6F2P78424 691 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 ST3GAL3Q11203 375 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SQSTM1Q13501 440 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 MAD2L1BPQ15013 274 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SPANXN2Q5MJ10 180 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 CCBE1Q6UXH8 406 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 FRRS1Q6ZNA5 592 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 P3H2Q8IVL5 708 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SLC35F3Q8IY50 421 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 UBQLNLQ8IYU4 475 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SLC25A45Q8N413 288 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 AQP11Q8NBQ7 271 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OR52J3Q8NH60 311 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 OTUB1Q96FW1 271 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-229ENST00000557348 SLC41A2Q96JW4 573 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 DGAT2Q96PD7 388 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 ADAP2Q9NPF8 381 aa11.78□□□□□ -0.52
SHMT2-229ENST00000557348 TMEM131Q92545 1883 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CACNA1IQ9P0X4 2223 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 HMX3A6NHT5 357 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PTGES3LE9PB15 166 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 FFAR1O14842 300 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PCDH17O14917 1159 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 OR10H3O60404 316 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PRAMEF2O60811 474 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 OR2B3O76000 313 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 KCNK2O95069 426 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 NKX2-2O95096 273 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 ACP2P11117 423 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 TDGF1P13385 188 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CYP4B1P13584 511 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 PSMB9P28065 219 aa11.77□□□□□ -0.53
SHMT2-229ENST00000557348 CNR2P34972 360 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms