RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 GNSP15586 552 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 KELP23276 732 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 IL32P24001 234 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ATP6V1E1P36543 226 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RFX3P48380 749 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SPINT3P49223 89 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RNF144AP50876 292 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GBX2P52951 348 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TBPL1P62380 186 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NTHL1P78549 312 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 DEFB103AP81534 67 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FUT5Q11128 374 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RAB40BQ12829 278 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF273Q14593 569 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF750Q32MQ0 723 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 LYPLAL1Q5VWZ2 237 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SMARCD3Q6STE5 483 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ALKAL2Q6UX46 152 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 C17orf107Q6ZR85 190 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 C6orf120Q7Z4R8 191 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM150AQ86TG1 271 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 IL17RCQ8NAC3 791 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 KREMEN2Q8NCW0 462 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OR8K5Q8NH50 307 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 XAGE5Q8WWM1 108 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CNOT9Q92600 299 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ARMC5Q96C12 935 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SCRN2Q96FV2 425 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF354BQ96LW1 612 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SFXN2Q96NB2 322 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 HCN3Q9P1Z3 774 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SEC14L3Q9UDX4 400 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FBXL2Q9UKC9 423 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 HEATR5BQ9P2D3 2071 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 LAMA1P25391 3075 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MEIKINA0A087WXM9 373 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MFSD2BA6NFX1 497 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GLOD5A6NK44 160 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 BET1O15155 118 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GRM6O15303 877 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PIP5K1CO60331 668 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 UGDHO60701 494 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ERAL1O75616 437 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TPPPO94811 219 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SLCO2B1O94956 709 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 HLA-DPB1P04440 258 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ALDOBP05062 364 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NAT2P11245 290 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SNRPBP14678 240 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TRHRP34981 398 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 AHRP35869 848 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GPR4P46093 362 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PITPNBP48739 271 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CDH11P55287 796 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 AP1S2P56377 157 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OC90Q02509 493 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ELOAQ14241 798 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ANGPT1Q15389 498 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FNDC3BQ53EP0 1204 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NHLRC3Q5JS37 347 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SLC25A30Q5SVS4 291 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PIP5KL1Q5T9C9 394 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MED27Q6P2C8 311 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 METAP1DQ6UB28 335 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SEZ6L2Q6UXD5 910 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NHLRC1Q6VVB1 395 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GDPD4Q6W3E5 623 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GAREM2Q75VX8 874 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OAFQ86UD1 273 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CBARPQ8N350 705 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CPXM2Q8N436 756 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM99Q8N816 258 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RASGEF1AQ8N9B8 481 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FBXO15Q8NCQ5 510 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OR51G2Q8NGK0 314 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OR56A3Q8NH54 315 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 HGDQ93099 445 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 EXOSC8Q96B26 276 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NXPE2Q96DL1 559 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PPA2Q9H2U2 334 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 BRD7Q9NPI1 651 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MRPS18AQ9NVS2 196 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ENOPH1Q9UHY7 261 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SLC13A4Q9UKG4 626 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 LHX6Q9UPM6 363 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CACNA1CQ13936 2221 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 A0A1W2PRQ8 180 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OR2W5A6NFC9 320 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 M0R233 179 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PLPP1O14494 284 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CHST10O43529 356 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SSNA1O43805 119 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SLC28A2O43868 658 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 DHFRP00374 187 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 IFNA14P01570 189 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 THY1P04216 161 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CHRM4P08173 479 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NMBP08949 121 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MPC1LP0DKB6 136 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CTSAP10619 480 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms