RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EXOSC7Q15024 291 aaKnown RBP17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 PRICKLE4Q2TBC4 344 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 CA13Q8N1Q1 262 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF619Q8N2I2 560 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 CSNK1A1LQ8N752 337 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 TM9SF4Q92544 642 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 OSTF1Q92882 214 aa17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 CACYBPQ9HB71 228 aaKnown RBP17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 CAB39Q9Y376 341 aaPredicted RBP17.25■□□□□ 0.35
PRPF40B-208ENST00000548436 A0A075B6Q4 140 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 C2CD4DB7Z1M9 353 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 PEX12O00623 359 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 PLOD3O60568 738 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 MED26O95402 600 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 CTSBP07858 339 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 GKN3PP0CG01 181 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 HTR2AP28223 471 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 WNT4P56705 351 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 AGAP7PQ5VUJ5 663 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF620Q6ZNG0 422 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 TAF8Q7Z7C8 310 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 NECTIN4Q96NY8 510 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 PRSS27Q9BQR3 290 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 MAT2BQ9NZL9 334 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 PCDHGB6Q9Y5F9 930 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 SPIN1Q9Y657 262 aaPredicted RBP17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 SPACA6W5XKT8 324 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 SGK494L7N484 410 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 TNRC18O15417 2968 aaPredicted RBP17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 STX11O75558 287 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 C1orf61Q13536 156 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 EIPR1Q53HC9 387 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 MANEAQ5SRI9 462 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 MRPL2Q5T653 305 aaKnown RBP17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF655Q8N720 491 aaPredicted RBP17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 OR9Q1Q8NGQ5 310 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 GATAD2BQ8WXI9 593 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 FAM60AQ9NP50 221 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 DUSP22Q9NRW4 184 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 KLHL3Q9UH77 587 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 ZNF229Q9UJW7 825 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 SSR3Q9UNL2 185 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 CYP8B1Q9UNU6 501 aa17.24■□□□□ 0.35
PRPF40B-208ENST00000548436 TRIOO75962 3097 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 KIR2DS5A0A0G2JLQ3 304 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 A0A0G2JNG1 304 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SPTY2D1-AS1A0A0U1RR47 76 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 PNMA8CA0A1B0GUJ8 204 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TMEM129A0AVI4 362 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SNTNA6NMZ2 147 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 KIR2DS3K7RE56 304 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 PLD2O14939 933 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 LRRTM2O43300 516 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SLC2A10O95528 541 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 LIMS3P0CW19 117 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 LIMS4P0CW20 117 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TYRP1P17643 537 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 CD79BP40259 229 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TGM4P49221 684 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 BNC1Q01954 994 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 FZD2Q14332 565 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 KIR2DS5Q14953 304 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 PGGHGQ32M88 737 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 AADACL4Q5VUY2 407 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 FIGNL1Q6PIW4 674 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 WDR88Q6ZMY6 472 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 COX18Q8N8Q8 333 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 CDRT4Q8N9R6 151 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TMEM203Q969S6 136 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 ANKRD9Q96BM1 317 aaPredicted RBP17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TOE1Q96GM8 510 aaKnown RBP17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 NELL2Q99435 816 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SDHCQ99643 169 aaPredicted RBP17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 GDF15Q99988 308 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 PRRG3Q9BZD7 231 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SP140LQ9H930 580 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SMURF1Q9HCE7 757 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SNTG1Q9NSN8 517 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 TXNL4BQ9NX01 149 aaKnown RBP17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 NLGN3Q9NZ94 848 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SATB2Q9UPW6 733 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 YARS2Q9Y2Z4 477 aaKnown RBP17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SLCO1B1Q9Y6L6 691 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 GON4LQ3T8J9 2241 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 SPTBP11277 2137 aa17.23■□□□□ 0.35
PRPF40B-208ENST00000548436 IRGMA1A4Y4 181 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 DBIP07108 87 aaKnown RBP17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 MAP3K8P41279 467 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 CDH11P55287 796 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 DEFB110Q30KQ9 67 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 SPANXN2Q5MJ10 180 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 KIAA0895LQ68EN5 471 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 DGAT2L6Q6ZPD8 337 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 Q6ZS52 159 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 RANBP3LQ86VV4 465 aaPredicted RBP17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 POC5Q8NA72 575 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 TOR1AIP2Q8NFQ8 470 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 GPR151Q8TDV0 419 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 SAMD8Q96LT4 415 aa17.22■□□□□ 0.35
PRPF40B-208ENST00000548436 STACQ99469 402 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms