RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FOLH1BQ9HBA9 442 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 PSME2Q9UL46 239 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 TMCO1Q9UM00 188 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 GPR52Q9Y2T5 361 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 MAGED1Q9Y5V3 778 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 AP4B1Q9Y6B7 739 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 SMIM23A6NLE4 172 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 PPP6CO00743 305 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 SCO2O43819 266 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 GPRIN2O60269 458 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 ADAM11O75078 769 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 NDUFS7O75251 213 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 SMIM24O75264 130 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 NUDT17P0C025 328 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 CCNG1P51959 295 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 RPS3AP61247 264 aaKnown RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 TRA2BP62995 288 aaKnown RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 PSG6Q00889 435 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 CTU2Q2VPK5 515 aaKnown RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 PGGHGQ32M88 737 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 NCMAPQ5T1S8 102 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 SEZ6L2Q6UXD5 910 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 BEND4Q6ZU67 534 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 LCA5Q86VQ0 697 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 CCDC116Q8IYX3 515 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 ZNF483Q8TF39 744 aaPredicted RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 KAT2AQ92830 837 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 NEUROG1Q92886 237 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 GFM2Q969S9 779 aaKnown RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 FBXW5Q969U6 566 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 C1GALT1C1Q96EU7 318 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 ADGRG7Q96K78 797 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 STMN4Q9H169 189 aaPredicted RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 PPCSQ9HAB8 311 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 FARSBQ9NSD9 589 aaKnown RBP11.46□□□□□ -0.57
USP28-212ENST00000544750 FLRT3Q9NZU0 649 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 ZNF225Q9UK10 706 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 CLEC4AQ9UMR7 237 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 LIPT1Q9Y234 373 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 EMC9Q9Y3B6 208 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 RNF115Q9Y4L5 304 aa11.46□□□□□ -0.57
USP28-212ENST00000544750 IGLV3-32A0A0A0MS00 114 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 DLX3O60479 287 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 PLOD3O60568 738 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 GCM2O75603 506 aaPredicted RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 CD8AP01732 235 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 GSTA1P08263 222 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 KRT20P35900 424 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 MRPS22P82650 360 aaKnown RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 UNC50Q53HI1 259 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 C6orf52Q5T4I8 152 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 EMBQ6PCB8 327 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 SLC44A2Q8IWA5 706 aaPredicted RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 OR9A2Q8NGT5 310 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 SMAP2Q8WU79 429 aaPredicted RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 C11orf24Q96F05 449 aaPredicted RBP11.45□□□□□ -0.58
USP28-212ENST00000544750 TMEM237Q96Q45 408 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 PARD6BQ9BYG5 372 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 GRIP2Q9C0E4 1043 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 LRTM1Q9HBL6 345 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 TMEM160Q9NX00 188 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 UTS2RQ9UKP6 389 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 RAB21Q9UL25 225 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 ABCG2Q9UNQ0 655 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 SLC12A4Q9UP95 1085 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 ZNF780BQ9Y6R6 833 aa11.45□□□□□ -0.58
USP28-212ENST00000544750 SHISA8B8ZZ34 492 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 PDYNP01213 254 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 PROCP04070 461 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 TSPAN8P19075 237 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 ALDH9A1P49189 494 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 CDH13P55290 713 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 IFT88Q13099 833 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 SGCBQ16585 318 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 ZNF672Q499Z4 452 aaPredicted RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 ZNF678Q5SXM1 525 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 LETMD1Q6P1Q0 360 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 CNPY4Q8N129 248 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 OR7G2Q8NG99 324 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 OR4F6Q8NGB9 312 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 DUSP19Q8WTR2 217 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 ATP6V1E2Q96A05 226 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 S100PBPQ96BU1 408 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 TRAF4Q9BUZ4 470 aaPredicted RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 FAIM2Q9BWQ8 316 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 C12orf65Q9H3J6 166 aaKnown RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 PTGES2Q9H7Z7 377 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 BRF2Q9HAW0 419 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 SDHAF3Q9NRP4 125 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 FAM120CQ9NX05 1096 aaKnown RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 GDF2Q9UK05 429 aaPredicted RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 CDC42EP3Q9UKI2 254 aa11.44□□□□□ -0.58
USP28-212ENST00000544750 HEATR1Q9H583 2144 aaKnown RBP11.44□□□□□ -0.58
USP28-212ENST00000544750 G3V2L1 256 aa11.43□□□□□ -0.58
USP28-212ENST00000544750 GLRA3O75311 464 aa11.43□□□□□ -0.58
USP28-212ENST00000544750 ATP5F1P24539 256 aaPredicted RBP11.43□□□□□ -0.58
USP28-212ENST00000544750 THBS2P35442 1172 aa11.43□□□□□ -0.58
USP28-212ENST00000544750 EIF1AXP47813 144 aaKnown RBP11.43□□□□□ -0.58
USP28-212ENST00000544750 PRKAA2P54646 552 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms